| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra014747 |
| Family | CBM43 |
| Protein Properties | Length: 452 Molecular Weight: 48888.9 Isoelectric Point: 9.9269 |
| Chromosome | Chromosome/Scaffold: 04 Start: 2757605 End: 2759495 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 367 | 449 | 2.2e-33 |
| WCVAKWGASDAQLQGNIDWVCSQGGIDCKPIQAGGSCFNPNSVRTHASFVMNAYFQRNGRTDGSCNFSGTGVVVGNNPSNGAC | |||
| GH17 | 29 | 341 | 0 |
| IGVNYGTLGNLPPPNEVANFLKTQTSIDSVKIFNVDPNILRAFAGPGISVVVTVPNGDIPALANGRQARRWVSANILPFHPQTKIKYISVGNEILLTGDN NMISNLLPAMRNLNKALVRAGVRDVKVTTAHSLNIIAYDLNGAPSSGRFRPGWDKGVLAPILAYHRRTKSPFMINPYPYFGFDPKNVNFAIFRSPYKAVR DPFTHKIYTNMYDALMDSTYSAMKALGYGDVNIVVGETGWPSACDAPWCSLENAAWFNKNIIKRSQRQGTPLMPNRRFETYIFGLFNEEGKPGPTAERNW GLFHSDFSPVYDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MAKAPPSISL LLLLSAAVFL ALPAVISAIG VNYGTLGNLP PPNEVANFLK TQTSIDSVKI 60 FNVDPNILRA FAGPGISVVV TVPNGDIPAL ANGRQARRWV SANILPFHPQ TKIKYISVGN 120 EILLTGDNNM ISNLLPAMRN LNKALVRAGV RDVKVTTAHS LNIIAYDLNG APSSGRFRPG 180 WDKGVLAPIL AYHRRTKSPF MINPYPYFGF DPKNVNFAIF RSPYKAVRDP FTHKIYTNMY 240 DALMDSTYSA MKALGYGDVN IVVGETGWPS ACDAPWCSLE NAAWFNKNII KRSQRQGTPL 300 MPNRRFETYI FGLFNEEGKP GPTAERNWGL FHSDFSPVYD VGLLRNGQGG GGRRPAPALP 360 APTGGKWCVA KWGASDAQLQ GNIDWVCSQG GIDCKPIQAG GSCFNPNSVR THASFVMNAY 420 FQRNGRTDGS CNFSGTGVVV GNNPSNGACR Y* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0004 | 66 | 334 | 275 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 4.0e-25 | 366 | 438 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-41 | 366 | 451 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 6.0e-85 | 29 | 341 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76666.1 | 0 | 1 | 451 | 1 | 449 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| GenBank | AAM66982.1 | 0 | 1 | 451 | 1 | 449 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191103.1 | 0 | 1 | 451 | 1 | 449 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002312098.1 | 0 | 28 | 451 | 29 | 453 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530863.1 | 0 | 12 | 451 | 10 | 456 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 29 | 331 | 2 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3f55_C | 0 | 29 | 331 | 2 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3f55_B | 0 | 29 | 331 | 2 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3f55_A | 0 | 29 | 331 | 2 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 3em5_D | 0 | 29 | 331 | 2 | 303 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
