| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra014753 |
| Family | GH28 |
| Protein Properties | Length: 404 Molecular Weight: 43569.8 Isoelectric Point: 8.6382 |
| Chromosome | Chromosome/Scaffold: 04 Start: 2812896 End: 2814909 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 391 | 0 |
| KSACTRKGGNSKIYVPKGTFYLGGVEFVGPCANLIEFVIDGTLLAPSNPRDIKKDTWIHFRYINNLIISGAGTLDGQGKESWPLNDCHKNPSCPKLAMTM GFAFVNNSRINGITSLNSKMGHFNFFSVHHFSITGVTITAPGDSPNTDGLKFGFCSNINISKTHIGTGDDCIAILSGTTNMDISNVNCGPGHGISVGSLG KNKEEKDVNGLTVRDIVFNGTSDGIRIKTWESSASEILVSKFVYENIQMINVGNPINIDQKYCPHPPCEKKGESHVQIQDLKLKNIYGTSTNKVAVNLQC SKSFPCKKVELIDINLDHKGVEGGSSTAVCENVDGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 404 Download |
| MFSIASAFKA LCLSLLFVAV VASRPTNRPK VFNVQRYGAK ADGKTDNAKA FTNIWKSACT 60 RKGGNSKIYV PKGTFYLGGV EFVGPCANLI EFVIDGTLLA PSNPRDIKKD TWIHFRYINN 120 LIISGAGTLD GQGKESWPLN DCHKNPSCPK LAMTMGFAFV NNSRINGITS LNSKMGHFNF 180 FSVHHFSITG VTITAPGDSP NTDGLKFGFC SNINISKTHI GTGDDCIAIL SGTTNMDISN 240 VNCGPGHGIS VGSLGKNKEE KDVNGLTVRD IVFNGTSDGI RIKTWESSAS EILVSKFVYE 300 NIQMINVGNP INIDQKYCPH PPCEKKGESH VQIQDLKLKN IYGTSTNKVA VNLQCSKSFP 360 CKKVELIDIN LDHKGVEGGS STAVCENVDG SAHGKMVPQH CLN* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 9.0e-80 | 30 | 403 | 379 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 4.0e-81 | 22 | 403 | 389 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-82 | 29 | 399 | 377 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-92 | 63 | 388 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-123 | 32 | 401 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_175003.1 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 1 | 395 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179149.2 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_181560.1 | 0 | 1 | 403 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_193112.2 | 0 | 1 | 403 | 1 | 404 | polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-19 | 110 | 357 | 100 | 349 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.0000000000003 | 120 | 344 | 70 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1czf_B | 0.0000000000007 | 157 | 387 | 128 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.0000000000007 | 157 | 387 | 128 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_B | 0.0000000000009 | 119 | 388 | 72 | 333 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
