| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra014816 |
| Family | GH2 |
| Protein Properties | Length: 1105 Molecular Weight: 124895 Isoelectric Point: 5.3452 |
| Chromosome | Chromosome/Scaffold: 04 Start: 3356466 End: 3363831 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH2 | 87 | 970 | 0 |
| VKSLSGYWKFFLAPSPANVPEKFYDAAFPDSDWKALPVPSNWQCNGFDRPIYTNIVYPFPNDPPRVPEDNPTGCYRTYFQIPKEWKDRRILLHFEAVDSA FFAWVNGSPVGYSQDSRLPAEFEISDYCYPWDSGKQNVLAVQVFRWSDGSYLEDQDHWWLSGLHRDVLLLAKPKVFIADYFFKSKLADDFSYADILVEVK IDNMLESSKDLLLSNFIIEAAVFDTTSWYKSGGFSDELSPKVANLKLNLSPSPVLGFHGYLLEGKLDSPNLWSAEQPNVYILVVTLKDKSGKLLDSESSI VGIRQVSKAFKQLLVNGHPVMIKGVNRHEHHPRVGKTNIESCMVKDLIMMKEYNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDLSGHLKHP AKEPSWAAAMLDRVVGMVERDKNHACIISWSLGNEAGYGPNHSAMAGWIREKDPSRLVHYEGGGSRTDSTDIVCPMYMRIWDIVKIALDKNESRPLILCE YSHAMGNSNGNIDEYWEAINNTFGLQGGFIWDWVDQGLLKLGSDGIKRWAYGGDFGDQPNDLNFCLNGLMWPDRTPHPALHEVKHCYQPIKVSLTDGTIR VANAYFFNTTKELEFSWTVHGDGVELGSGTLSIPVIKPQNSFEMEWKSGPWFSFWNDSKAGELFLTITAKLSNPTRSLEAGHVLSSTQIPLPSKREIIPQ AIKKTDPIITSETVGDFIKISEQDSWELMINVQKGAIEGWKVQGVLLMNEAILPCFWRAPTDNDKGGGDSSYFSRWKAAQLDNVEFNVESCSVKSTTDKS VEIEFIYLGSSPSKSDALFKVNVTFIIYGSGDIITNWYVVPNSDLPPLPRVGVEFHIEKTLDRVEWYGRGPFECYPDRKSAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1105 Download |
| MASLATKMIL PSENGYRAWE DQTLFKWRKR DPHVTLRCHE SIEGSLRYWY QRNNVDLTVS 60 KSAVWNDDAV QASLDSAAFW VDGLPFVKSL SGYWKFFLAP SPANVPEKFY DAAFPDSDWK 120 ALPVPSNWQC NGFDRPIYTN IVYPFPNDPP RVPEDNPTGC YRTYFQIPKE WKDRRILLHF 180 EAVDSAFFAW VNGSPVGYSQ DSRLPAEFEI SDYCYPWDSG KQNVLAVQVF RWSDGSYLED 240 QDHWWLSGLH RDVLLLAKPK VFIADYFFKS KLADDFSYAD ILVEVKIDNM LESSKDLLLS 300 NFIIEAAVFD TTSWYKSGGF SDELSPKVAN LKLNLSPSPV LGFHGYLLEG KLDSPNLWSA 360 EQPNVYILVV TLKDKSGKLL DSESSIVGIR QVSKAFKQLL VNGHPVMIKG VNRHEHHPRV 420 GKTNIESCMV KDLIMMKEYN INAVRNSHYP QHPRWYELCD LFGMYMIDEA NIETHGFDLS 480 GHLKHPAKEP SWAAAMLDRV VGMVERDKNH ACIISWSLGN EAGYGPNHSA MAGWIREKDP 540 SRLVHYEGGG SRTDSTDIVC PMYMRIWDIV KIALDKNESR PLILCEYSHA MGNSNGNIDE 600 YWEAINNTFG LQGGFIWDWV DQGLLKLGSD GIKRWAYGGD FGDQPNDLNF CLNGLMWPDR 660 TPHPALHEVK HCYQPIKVSL TDGTIRVANA YFFNTTKELE FSWTVHGDGV ELGSGTLSIP 720 VIKPQNSFEM EWKSGPWFSF WNDSKAGELF LTITAKLSNP TRSLEAGHVL SSTQIPLPSK 780 REIIPQAIKK TDPIITSETV GDFIKISEQD SWELMINVQK GAIEGWKVQG VLLMNEAILP 840 CFWRAPTDND KGGGDSSYFS RWKAAQLDNV EFNVESCSVK STTDKSVEIE FIYLGSSPSK 900 SDALFKVNVT FIIYGSGDII TNWYVVPNSD LPPLPRVGVE FHIEKTLDRV EWYGRGPFEC 960 YPDRKSAAHV GIYEQNVADM HVPYIVPGEC GGRTDVRWVT FTNKEGVGIY ASTYGSSSPM 1020 QMNASYYTTG ELDRATHEED LVKGQSIEVH LDHKHMGIGG DDSWTPCVHD KYLIPPEPYS 1080 FSLRLCPITA ASSVLDMYKD QLPS* 1140 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 8.0e-103 | 810 | 1085 | 277 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 7.0e-113 | 397 | 677 | 291 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 1.0e-150 | 87 | 968 | 888 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 85 | 1087 | 1038 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 88 | 1091 | 1009 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB77564.1 | 0 | 1 | 1103 | 1 | 1074 | beta Galactosidase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001030858.1 | 0 | 1 | 1103 | 1 | 1107 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | NP_680128.1 | 0 | 1 | 1103 | 1 | 1106 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | XP_002299206.1 | 0 | 1 | 1104 | 1 | 1110 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002513059.1 | 0 | 1 | 1101 | 1 | 1107 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1f4h_D | 0 | 87 | 1086 | 49 | 1019 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 1f4h_C | 0 | 87 | 1086 | 49 | 1019 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 1f4h_B | 0 | 87 | 1086 | 49 | 1019 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 1f4h_A | 0 | 87 | 1086 | 49 | 1019 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 1f4a_D | 0 | 87 | 1086 | 49 | 1019 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK499562 | 275 | 244 | 518 | 0 |
| HO804274 | 389 | 129 | 510 | 0 |
| DK497367 | 260 | 1 | 260 | 0 |
| EX128920 | 262 | 640 | 901 | 0 |
| HO804274 | 47 | 504 | 549 | 0.00000003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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