| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra014964 |
| Family | GH116 |
| Protein Properties | Length: 947 Molecular Weight: 105687 Isoelectric Point: 6.6612 |
| Chromosome | Chromosome/Scaffold: 07 Start: 4812978 End: 4818600 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH116 | 531 | 893 | 0 |
| GRFLYLEGVEYVMWNTYDVHFYASYALLMLFPKIELNIQRDFAKAVLSEDGRKVKFLAEGNLGIRKVRGAVPHDLGMHDPWNEMNAYNIHDTSKWKDLNP KFVLQVYRDFAATGDYQFGIDVWPAVRAAMEYMEQFDRDNDDLIENDGFPDQTYDTWTVHGVSAYCGCLWLAALQAAAAMALQIGDKFFAELCKNKFLNA KAALEAKLWNGTYFNYDSGASSNSKSIQTDQLAGQWYTASSGLPPIFEDSKIKSTLQKIFDFNVMKTKGGRMGAVNGMHPDGKVDETCMQSREIWTGVTY AAAATMILSGMEEQGFTTAEGIFTAGWSEEGFGYWFQTPEGWTMDGHYRSLIYMRPLAIWGMQ | |||
| Full Sequence |
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| Protein Sequence Length: 947 Download |
| MVGPSTLFHR RKHSWPPEEF ITKTTLQLLD FDSAAPPPHA WRRRLNCHAN ILKEFTITFR 60 EAIKMVRLGI RLWSYVREEA SHGRKAPIDP FTKENCKPSA SQGVPLGGMG SGSISRGFRG 120 EFKQWQITPG TCDPSPMMSN QFSIFISREG GHKKYASVLA PGQHGSLGKT RDKGISSWGW 180 NLNGQHSTYH ALFPRAWTVY DGEPDPELKI SCRQISPFIP NNYRDSSLPA AVFVYTLVNT 240 GKERAKVSLL FTWANSIGGT SHMLGGHVNE PFVGEDGVSG VLLHHKTGKG NPPVTFAISA 300 CETQNVNVTV LPCFGLSEDS SFTAKDMWDK MEKDGKFDQE NFNSGPSVPS TAGDTICAAV 360 SATAWVEAHG KCTVSFALSW SSPKVKFSKG STYDRRYTKF YGTSPRAAVD LVHDALTHYK 420 RWEEDIEAWQ NPILRDERLP EWYKFTLFNE LYFLVAGGTV WIDSASVRAN GNSQLQQSDL 480 GNSDGGVDSK DQQNNRDNCD SNGIESNGEA SVTDQSNGLF VDTSHVDDDV GRFLYLEGVE 540 YVMWNTYDVH FYASYALLML FPKIELNIQR DFAKAVLSED GRKVKFLAEG NLGIRKVRGA 600 VPHDLGMHDP WNEMNAYNIH DTSKWKDLNP KFVLQVYRDF AATGDYQFGI DVWPAVRAAM 660 EYMEQFDRDN DDLIENDGFP DQTYDTWTVH GVSAYCGCLW LAALQAAAAM ALQIGDKFFA 720 ELCKNKFLNA KAALEAKLWN GTYFNYDSGA SSNSKSIQTD QLAGQWYTAS SGLPPIFEDS 780 KIKSTLQKIF DFNVMKTKGG RMGAVNGMHP DGKVDETCMQ SREIWTGVTY AAAATMILSG 840 MEEQGFTTAE GIFTAGWSEE GFGYWFQTPE GWTMDGHYRS LIYMRPLAIW GMQWALSLPK 900 AILDAPKINM MDRVHMSPRS RRFSHNSRVV THKAKCFGDS SLSCSC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4354 | COG4354 | 4.0e-33 | 103 | 463 | 365 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 9.0e-67 | 103 | 422 | 332 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 4.0e-68 | 528 | 896 | 387 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 3.0e-153 | 531 | 894 | 368 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB01359.1 | 0 | 1 | 946 | 1 | 937 | unnamed protein product [Arabidopsis thaliana] |
| RefSeq | NP_189060.2 | 0 | 1 | 946 | 1 | 950 | catalytic/ glucosylceramidase [Arabidopsis thaliana] |
| RefSeq | XP_002285674.1 | 0 | 7 | 946 | 6 | 978 | PREDICTED: similar to catalytic [Vitis vinifera] |
| RefSeq | XP_002303825.1 | 0 | 5 | 946 | 4 | 966 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518119.1 | 0 | 5 | 946 | 4 | 968 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO779860 | 279 | 673 | 947 | 0 |
| HO779860 | 148 | 527 | 674 | 0 |
| HO779860 | 81 | 417 | 496 | 0 |
| EX126394 | 285 | 601 | 885 | 0 |
| EX138348 | 272 | 676 | 947 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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