| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra014979 |
| Family | CBM43 |
| Protein Properties | Length: 479 Molecular Weight: 52526.5 Isoelectric Point: 6.662 |
| Chromosome | Chromosome/Scaffold: 07 Start: 4633146 End: 4634776 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 389 | 472 | 3.5e-27 |
| WCVVVEGASEEELGQALDFACGRSNETCAALAPGRECYAPVSVTWHASYAFSSYWAQFRNQSSQCYFNGLARETTTNPGNERCK | |||
| GH17 | 39 | 363 | 0 |
| IGISYGRSGNNLPSPYQSINLIKTLKAGHVKLYDADQETLTLLSKTNLYVTIMVPNNQIITIGADQTAADNWVNTNVLPHYPQTRIRFVLVGNEILSYNS DQDKQTWANLVPAMRKIVNSLRARGIHNIKVGTPLAMDVLRSSYPPSSGAFREEVAAPVMLPLLKFLNGTNSFFFLDVYPYFPWSTDPVNNDLGFALFES NSTYTDPQTGLVYTNLLDQMLDSVIFAMTKLGYPNISLAISETGWPNSGDIDETGANILNAATYNRNLIKKMTANPPLGTPARPGLPIPTFLFSLFNENQ KPGSGTERHWGILNPDGTQIYEIDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MSSPMAYFVL FLFTLIVLSS SSCYAIGNNK TLSSLASRIG ISYGRSGNNL PSPYQSINLI 60 KTLKAGHVKL YDADQETLTL LSKTNLYVTI MVPNNQIITI GADQTAADNW VNTNVLPHYP 120 QTRIRFVLVG NEILSYNSDQ DKQTWANLVP AMRKIVNSLR ARGIHNIKVG TPLAMDVLRS 180 SYPPSSGAFR EEVAAPVMLP LLKFLNGTNS FFFLDVYPYF PWSTDPVNND LGFALFESNS 240 TYTDPQTGLV YTNLLDQMLD SVIFAMTKLG YPNISLAISE TGWPNSGDID ETGANILNAA 300 TYNRNLIKKM TANPPLGTPA RPGLPIPTFL FSLFNENQKP GSGTERHWGI LNPDGTQIYE 360 IDFSGTRPVS SLGSLPKPSN NVPFKGNVWC VVVEGASEEE LGQALDFACG RSNETCAALA 420 PGRECYAPVS VTWHASYAFS SYWAQFRNQS SQCYFNGLAR ETTTNPGNER CKFPSVTL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 4.0e-5 | 1 | 354 | 372 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-17 | 389 | 459 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 5.0e-31 | 389 | 473 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 8.0e-126 | 39 | 363 | 326 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64490.1 | 0 | 19 | 478 | 15 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| GenBank | ABK28569.1 | 0 | 19 | 478 | 15 | 476 | unknown [Arabidopsis thaliana] |
| EMBL | CAA49513.1 | 0 | 10 | 478 | 1 | 474 | beta-1,3-glucanase homologue [Brassica napus] |
| RefSeq | NP_189019.1 | 0 | 19 | 478 | 15 | 476 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_193144.1 | 0 | 5 | 478 | 1 | 478 | MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 39 | 363 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 39 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 39 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 39 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 39 | 363 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
