| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015000 |
| Family | PL1 |
| Protein Properties | Length: 448 Molecular Weight: 49654.1 Isoelectric Point: 8.4238 |
| Chromosome | Chromosome/Scaffold: 07 Start: 4467495 End: 4469849 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 159 | 365 | 0 |
| VIQVEPLWIIFKRDMVITLKQELIMNSYKTIDARGANVHVANGACITIQGITHVIVHGLHIHDCIRTGNAMVRSSPSHYGMRNMSDGDAVSIYASSHIWI DHNSLSKCADGLVDVVMGSTAVTISNNHLTHHNEVMLLGNNDLYTQDKNMKVTIAYNHFGEGLRQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS QGNRYAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MASSSQKLTS ACFVVLLIFV VCVLTATNLR NNQVSLSRKL KTEDSHSFNN STIAIRREGV 60 ELNEHAVADP DQVALLQTNE QNITERRKLG FFSCGNGNLI DDCWRCDPNW HMNRKRLADC 120 GMGFGSNATG GRDGRFYVVT DPTDEDMEFP RSGTLRHAVI QVEPLWIIFK RDMVITLKQE 180 LIMNSYKTID ARGANVHVAN GACITIQGIT HVIVHGLHIH DCIRTGNAMV RSSPSHYGMR 240 NMSDGDAVSI YASSHIWIDH NSLSKCADGL VDVVMGSTAV TISNNHLTHH NEVMLLGNND 300 LYTQDKNMKV TIAYNHFGEG LRQRMPRCRH GYFHVVNNDY THWEMYAIGG SANPTINSQG 360 NRYAAPKNRY AKQVTKRVRT EKSEWKKWNW RSEGDMLVNG AFFIQSGEGA TANYESASSL 420 AAKPASMVGS ITSTAGALGC RSGKPCY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-23 | 185 | 361 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-68 | 178 | 363 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-73 | 172 | 367 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 81 | 446 | 3 | 368 | pectate lyase [Fragaria x ananassa] |
| EMBL | CAB36835.1 | 0 | 79 | 446 | 7 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
| RefSeq | NP_189065.2 | 0 | 1 | 447 | 1 | 452 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567409.1 | 0 | 1 | 446 | 1 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002297822.1 | 0 | 5 | 446 | 4 | 450 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 98 | 438 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 98 | 438 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0000000000002 | 167 | 363 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000003 | 243 | 364 | 187 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.0000000005 | 188 | 412 | 90 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
