PlantCAZyme

Basic Information
Species	Brassica rapa
Cazyme ID	Bra015025
Family	GH14
Protein Properties	Length: 571 Molecular Weight: 63379.6 Isoelectric Point: 5.5012
Chromosome	Chromosome/Scaffold: 07 Start: 4201269 End: 4204031
Description	beta-amylase 1
View CDS

External Links
NCBI Taxonomy
CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH14	104	526	0
FVMMPLDSVTMGNTVNRRKAMRASLQALKSAGVEGIMIDVWWGLVEREAPGAYNWGGYNELLEMAKKVGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEE VDKDPDLAYTDQWGRRNHEYISLGADTLPVLKGRTPVQCYSDFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRYPSYPEQDGTWRFPGIGAFQCYDKYSL SSLKAAAEAYGKPEWGGTGPTDAGHYNNWPEDTQFFKKEDGGWNTEYGEFFLTWYSQMLLDHGERILSSAKSIFQDTGVKISVKVAGIHWHYGTRSHAPE LTAGYYNTRFRDGYLPIAQMLARHNAIFNFTCIEMRDHEQPQDALCAPEKLVNQVALATLAAEVPLAGENALPRYDDYAHEQILKASALSFDQNSEGENR EMCAFTYLRMNPELFKADNWGKF

Full Sequence
Protein Sequence Length: 571 Download
MAFNLTHQLG ALAGTPIKSG EMTAPSAESS LSVSPPSARM PISMNMNYTS NRNVSPPMSP 60 VLGSRRADLS VACKAFAVET VEEQRTYKEG GIGGEKEKGG VPVFVMMPLD SVTMGNTVNR 120 RKAMRASLQA LKSAGVEGIM IDVWWGLVER EAPGAYNWGG YNELLEMAKK VGLKVQAVMS 180 FHQCGGNVGD SVTIPLPQWV VEEVDKDPDL AYTDQWGRRN HEYISLGADT LPVLKGRTPV 240 QCYSDFMRAF RDNFKHLLGD TIVEIQVGMG PAGELRYPSY PEQDGTWRFP GIGAFQCYDK 300 YSLSSLKAAA EAYGKPEWGG TGPTDAGHYN NWPEDTQFFK KEDGGWNTEY GEFFLTWYSQ 360 MLLDHGERIL SSAKSIFQDT GVKISVKVAG IHWHYGTRSH APELTAGYYN TRFRDGYLPI 420 AQMLARHNAI FNFTCIEMRD HEQPQDALCA PEKLVNQVAL ATLAAEVPLA GENALPRYDD 480 YAHEQILKAS ALSFDQNSEG ENREMCAFTY LRMNPELFKA DNWGKFVGFV KKMGEGRDSD 540 RCREEVEREA EHFVHVTQPL VQEAAVALTH * 600

Full Sequence

Protein Sequence Length: 571 Download

MAFNLTHQLG ALAGTPIKSG EMTAPSAESS LSVSPPSARM PISMNMNYTS NRNVSPPMSP    60
VLGSRRADLS VACKAFAVET VEEQRTYKEG GIGGEKEKGG VPVFVMMPLD SVTMGNTVNR    120
RKAMRASLQA LKSAGVEGIM IDVWWGLVER EAPGAYNWGG YNELLEMAKK VGLKVQAVMS    180
FHQCGGNVGD SVTIPLPQWV VEEVDKDPDL AYTDQWGRRN HEYISLGADT LPVLKGRTPV    240
QCYSDFMRAF RDNFKHLLGD TIVEIQVGMG PAGELRYPSY PEQDGTWRFP GIGAFQCYDK    300
YSLSSLKAAA EAYGKPEWGG TGPTDAGHYN NWPEDTQFFK KEDGGWNTEY GEFFLTWYSQ    360
MLLDHGERIL SSAKSIFQDT GVKISVKVAG IHWHYGTRSH APELTAGYYN TRFRDGYLPI    420
AQMLARHNAI FNFTCIEMRD HEQPQDALCA PEKLVNQVAL ATLAAEVPLA GENALPRYDD    480
YAHEQILKAS ALSFDQNSEG ENREMCAFTY LRMNPELFKA DNWGKFVGFV KKMGEGRDSD    540
RCREEVEREA EHFVHVTQPL VQEAAVALTH *                                   600

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PLN02161	PLN02161	1.0e-140	101	533	443	+ beta-amylase
PLN02905	PLN02905	2.0e-141	101	533	438	+ beta-amylase
PLN00197	PLN00197	0	1	570	576	+ beta-amylase; Provisional
PLN02803	PLN02803	0	101	536	436	+ beta-amylase
PLN02801	PLN02801	0	101	560	462	+ beta-amylase

Gene Ontology
GO Term	Description
GO:0000272	polysaccharide catabolic process
GO:0016161	beta-amylase activity

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	AAL37169.1	0	1	570	1	569	AF319168_1 putative chloroplast-targeted beta-amylase [Brassica napus]
EMBL	CAN71375.1	0	3	570	1	570	hypothetical protein [Vitis vinifera]
RefSeq	NP_189034.1	0	1	570	1	575	BAM1 (BETA-AMYLASE 1); beta-amylase [Arabidopsis thaliana]
RefSeq	XP_002285569.1	0	2	570	3	573	PREDICTED: hypothetical protein [Vitis vinifera]
RefSeq	XP_002518196.1	0	1	570	1	574	Beta-amylase, putative [Ricinus communis]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1b1y_A	0	101	562	6	472	A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
PDB	1wdp_A	0	101	560	12	461	A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
PDB	1q6c_A	0	101	560	12	461	A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose
PDB	1bfn_A	0	101	560	12	461	A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose
PDB	1v3i_A	0	101	560	12	461	A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase

Metabolic Pathways
Pathway Name	Reaction	EC	Protein Name
starch degradation I	RXN-1827	EC-3.2.1.2	β-amylase

EST Download unfiltered results here

Hit	Length	Start	End	EValue
HO779314	410	159	568	0
EG518392	307	115	421	0
HO798206	348	221	568	0
HO826564	408	157	564	0
DT555349	322	188	509	0

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_025_00081.1	Aquca_053_00137.1	Aquca_005_00422.2	Aquca_005_00422.1	Aquca_013_00058.1
	Aquca_005_00321.1	Aquca_013_00313.3	Aquca_013_00313.1	Aquca_013_00313.2	Aquca_005_00321.2
	Aquca_005_00321.3	Aquca_003_00854.1	Aquca_005_00321.5	Aquca_005_00321.4
Arabidopsis lyrata	479940	915010	493370	482158	490517
	495656	346398	356484	909881	317500.202.436
	317500.202.436	317500.98.200	317500.98.200
Arabidopsis thaliana	AT3G23920.1	AT4G17090.1	AT4G15210.1	AT4G15210.2	AT2G32290.1
	AT4G00490.1	AT5G55700.1	AT2G45880.1	AT5G45300.2	AT5G45300.1
	AT5G55700.2	AT5G18670.1
Brachypodium distachyon	Bradi1g75610.1	Bradi3g28210.1	Bradi3g33730.1	Bradi2g08187.1	Bradi1g25447.1
	Bradi1g25440.1	Bradi1g25440.2	Bradi4g38630.1	Bradi1g18390.1	Bradi3g02800.1
	Bradi1g62400.1	Bradi2g00824.1.102.296	Bradi2g00824.1.102.296	Bradi2g00824.1.300.482	Bradi2g00824.1.300.482
Brassica rapa	Bra001937	Bra012676	Bra026230	Bra038088	Bra005581
	Bra037344	Bra035586	Bra028964	Bra004944	Bra021962
	Bra002178	Bra030861.155.384	Bra030861.155.384	Bra006472.313.564	Bra006472.313.564
	Bra006472.86.240	Bra006472.86.240	Bra030861.18.149	Bra030861.18.149
Carica papaya	evm.model.supercontig_59.40	evm.model.supercontig_18.253	evm.model.supercontig_18.252	evm.model.supercontig_16.112	evm.model.supercontig_12.148
	evm.model.supercontig_24.44
Capsella rubella	Carubv10013332m	Carubv10006488m	Carubv10022978m	Carubv10022897m	Carubv10005077m
	Carubv10000631m	Carubv10026217m	Carubv10000902m	Carubv10022771m	Carubv10025996m
	Carubv10000685m
Chlamydomonas reinhardtii	Cre06.g307150.t1.3	Cre01.g044100.t1.2.93.373	Cre01.g044100.t1.2.93.373	g6066.t1.88.353	g6066.t1.88.353
	g6066.t1.400.544	g6066.t1.400.544
Citrus clementina	Ciclev10004620m	Ciclev10019566m	Ciclev10014929m	Ciclev10019360m	Ciclev10019525m
	Ciclev10019424m	Ciclev10019617m	Ciclev10000501m	Ciclev10000490m	Ciclev10004689m
	Ciclev10020448m	Ciclev10020465m	Ciclev10000805m
Citrus sinensis	orange1.1g008030m	orange1.1g047891m	orange1.1g017328m	orange1.1g010067m	orange1.1g009162m
	orange1.1g008542m	orange1.1g009981m	orange1.1g037037m	orange1.1g005811m	orange1.1g005715m
	orange1.1g009121m	orange1.1g015723m	orange1.1g015815m	orange1.1g015809m	orange1.1g009335m
	orange1.1g010415m.114.332	orange1.1g010415m.114.332	orange1.1g008086m.281.538	orange1.1g008086m.281.538	orange1.1g012883m
	orange1.1g008086m.95.249	orange1.1g008086m.95.249	orange1.1g010415m.337.480	orange1.1g010415m.337.480
Cucumis sativus	Cucsa.255940.1	Cucsa.383110.1	Cucsa.321460.1	Cucsa.149940.1	Cucsa.148270.1
	Cucsa.042020.1	Cucsa.135490.2	Cucsa.135490.1	Cucsa.363240.1	Cucsa.228750.2
	Cucsa.228750.1
Eucalyptus grandis	Eucgr.E00330.1	Eucgr.H02879.1	Eucgr.E01023.1	Eucgr.A01734.1	Eucgr.E00138.1
	Eucgr.E00139.2	Eucgr.E00139.1	Eucgr.H03767.2	Eucgr.H03767.1	Eucgr.D02573.1
Fragaria vesca	mrna28316.1-v1.0-hybrid	mrna10649.1-v1.0-hybrid	mrna23897.1-v1.0-hybrid	mrna25108.1-v1.0-hybrid	mrna19322.1-v1.0-hybrid
	mrna19324.1-v1.0-hybrid	mrna15254.1-v1.0-hybrid	mrna06720.1-v1.0-hybrid	mrna25092.1-v1.0-hybrid	mrna27696.1-v1.0-hybrid
	mrna20803.1-v1.0-hybrid
Glycine max	Glyma09g29840.1	Glyma16g34360.2	Glyma11g04210.1	Glyma01g41190.1	Glyma05g05750.2
	Glyma17g16020.1	Glyma12g11130.1	Glyma06g45700.1	Glyma08g02920.3	Glyma05g36640.1
	Glyma12g32330.2	Glyma13g38110.1	Glyma12g32330.1	Glyma13g38120.1	Glyma18g46630.1
	Glyma09g39603.1	Glyma13g28630.1	Glyma15g10480.1	Glyma09g35070.1	Glyma01g35500.2
	Glyma07g14030.1
Gossypium raimondii	Gorai.011G181000.1	Gorai.011G180900.1	Gorai.006G073600.1	Gorai.008G230100.1	Gorai.007G030600.1
	Gorai.008G230100.2	Gorai.008G230100.3	Gorai.011G181000.3	Gorai.007G349200.2	Gorai.007G349200.1
	Gorai.005G208900.2	Gorai.005G208900.1	Gorai.007G099200.1	Gorai.006G215100.1	Gorai.011G181000.2
	Gorai.004G033500.2	Gorai.004G033500.1	Gorai.007G099100.2	Gorai.007G099100.1	Gorai.007G099100.5
	Gorai.004G033500.3	Gorai.004G158600.3	Gorai.004G158600.2	Gorai.004G158600.1	Gorai.007G099100.4
	Gorai.004G158600.10	Gorai.004G158600.8	Gorai.004G158600.7	Gorai.004G158600.11	Gorai.004G158600.12
	Gorai.004G158600.13	Gorai.008G218300.2	Gorai.008G218300.1	Gorai.011G185700.1	Gorai.008G218300.4
	Gorai.005G057300.3	Gorai.005G057300.2	Gorai.008G218300.3	Gorai.007G099100.6	Gorai.007G099100.3
	Gorai.005G057300.1	Gorai.004G158600.5	Gorai.004G158600.4	Gorai.004G158600.14	Gorai.004G158600.9
	Gorai.004G158600.6	Gorai.011G185700.2	Gorai.007G099100.8	Gorai.007G099100.7
Linum usitatissimum	Lus10004396	Lus10011035	Lus10001087	Lus10023700	Lus10040134
	Lus10039701	Lus10018491	Lus10003005.166.465	Lus10003005.166.465	Lus10039702
	Lus10023698	Lus10016615	Lus10030392	Lus10033976	Lus10012804
	Lus10035679	Lus10022516	Lus10018842	Lus10004398.264.475	Lus10004398.264.475
	Lus10037846.133.367	Lus10037846.133.367	Lus10004398.97.256	Lus10004398.97.256	Lus10017820
	Lus10023699	Lus10037846.367.526	Lus10037846.367.526	Lus10003005.77.166	Lus10003005.77.166
Malus domestica	MDP0000193684	MDP0000142134	MDP0000144491	MDP0000397284	MDP0000232760
	MDP0000223799	MDP0000193840	MDP0000186321	MDP0000276235	MDP0000902717
	MDP0000152511	MDP0000149950	MDP0000262498	MDP0000320172	MDP0000199386
	MDP0000196961	MDP0000764433	MDP0000730308.253.475	MDP0000730308.253.475	MDP0000206646
	MDP0000270321	MDP0000730308.93.252	MDP0000730308.93.252	MDP0000151553	MDP0000951028
	MDP0000221724	MDP0000141800	MDP0000252490	MDP0000143571	MDP0000569713
	MDP0000742467.364.473	MDP0000742467.364.473	MDP0000742467.245.370	MDP0000742467.245.370	MDP0000156852
Manihot esculenta	cassava4.1_004345m	cassava4.1_004325m	cassava4.1_007768m	cassava4.1_005562m	cassava4.1_022883m
	cassava4.1_005532m	cassava4.1_034006m	cassava4.1_002728m	cassava4.1_034364m	cassava4.1_005239m
	cassava4.1_032401m	cassava4.1_027464m
Medicago truncatula	Medtr5g013640.1	Medtr5g013620.1	Medtr2g089030.1	Medtr2g020240.1	Medtr5g026210.1
	Medtr5g026210.2
Mimulus guttatus	mgv1a003946m	mgv1a020099m	mgv1a005201m	mgv1a006126m	mgv1a003882m
	mgv1a004577m	mgv1a010885m	mgv1a002519m	mgv1a002385m	mgv1a019039m
	mgv1a021359m	mgv1a025115m	mgv1a025317m.115.312	mgv1a025317m.115.312	mgv1a013237m
	mgv1a025317m.13.111	mgv1a025317m.13.111	mgv1a010101m.75.163	mgv1a010101m.75.163	mgv1a010101m.174.294
	mgv1a010101m.174.294
Oryza sativa	LOC_Os03g04770.1	LOC_Os10g32810.1	LOC_Os10g41550.1	LOC_Os07g35940.1	LOC_Os07g35880.1
	LOC_Os01g13550.1	LOC_Os09g39570.1	LOC_Os02g03690.1	LOC_Os07g47120.1	LOC_Os03g22790.1
Panicum virgatum	Pavirv00029549m	Pavirv00052483m	Pavirv00001388m	Pavirv00055805m	Pavirv00005817m
	Pavirv00059428m	Pavirv00038949m	Pavirv00029779m	Pavirv00029778m	Pavirv00030206m
	Pavirv00001675m	Pavirv00041462m	Pavirv00049134m	Pavirv00011808m	Pavirv00015859m
	Pavirv00053609m	Pavirv00044941m.182.444	Pavirv00044941m.182.444	Pavirv00066842m	Pavirv00005512m
	Pavirv00056071m.82.381	Pavirv00056071m.82.381	Pavirv00070697m	Pavirv00044941m.443.562	Pavirv00044941m.443.562
	Pavirv00056071m.378.515	Pavirv00056071m.378.515
Physcomitrella patens	Pp1s106_57V6.1	Pp1s317_42V6.1	Pp1s233_4V6.1	Pp1s23_21V6.1	Pp1s16_320V6.1
	Pp1s121_168V6.1	Pp1s9_318V6.6	Pp1s9_318V6.5	Pp1s9_318V6.4	Pp1s9_318V6.3
	Pp1s9_318V6.2	Pp1s9_318V6.1	Pp1s121_168V6.2
Phaseolus vulgaris	Phvul.004G143600.1	Phvul.003G226900.1	Phvul.011G107700.1	Phvul.005G112400.1	Phvul.002G301200.1
	Phvul.008G065600.1	Phvul.006G161200.1	Phvul.002G123700.1
Picea abies	MA_124514g0010	MA_129283g0010	MA_3193g0010	MA_10432035g0010	MA_10432630g0020
	MA_21789g0010	MA_35466g0010.91.318	MA_35466g0010.91.318	MA_8617832g0010	MA_10436858g0010
	MA_9400165g0010	MA_10432251g0010	MA_119385g0010	MA_158054g0010	MA_140148g0010
	MA_9635863g0010	MA_5725043g0010	MA_126087g0010	MA_35466g0010.318.430	MA_35466g0010.318.430
	MA_119385g0020	MA_436199g0010	MA_19374g0030	MA_7200737g0010	MA_10429945g0010
	MA_19374g0020	MA_9635863g0020
Populus trichocarpa	Potri.010G062900.1	Potri.001G148900.3	Potri.001G148900.2	Potri.001G148900.1	Potri.008G174100.2
	Potri.008G174100.1	Potri.003G085500.1	Potri.010G062900.2	Potri.003G143500.1	Potri.017G040800.3
	Potri.017G040800.1	Potri.001G087600.1	Potri.017G040800.2	Potri.014G083800.1	Potri.014G083800.3
	Potri.017G040800.4	Potri.014G083700.1	Potri.002G159300.5	Potri.002G159300.3	Potri.002G159300.1
	Potri.002G159300.4	Potri.017G040800.5	Potri.003G106500.3	Potri.003G106500.5	Potri.003G106500.2
	Potri.003G106500.1	Potri.008G204200.1	Potri.002G159300.6	Potri.003G106500.4	Potri.014G083800.2
	Potri.002G159300.2	Potri.017G040800.6	Potri.014G083700.2	Potri.008G204200.2	Potri.T101200.1
	Potri.T101100.1
Prunus persica	ppa005431m	ppa003812m	ppa003539m	ppa004334m	ppa006189m
	ppa005450m	ppa002199m	ppa002957m	ppa004116m	ppa019231m
Ricinus communis	29904.m003046	29822.m003517	30156.m001723	30174.m009028	30174.m009027
	29726.m003986	29827.m002636	29629.m001377
Setaria italica	Si034946m	Si035044m	Si034983m	Si033152m	Si029378m
	Si000924m	Si028957m	Si016592m	Si032033m	Si034947m
	Si016622m.223.485	Si016622m.223.485	Si016622m.485.614	Si016622m.485.614
Selaginella moellendorffii	145994	232533	419538
Sorghum bicolor	Sb01g047500.1	Sb01g028700.1	Sb01g019850.1	Sb02g035600.1	Sb02g035590.1
	Sb03g000480.1	Sb02g012320.1	Sb04g002450.1	Sb02g042220.1	Sb01g035370.1
	Sb02g035600.2.13.225	Sb02g035600.2.13.225	Sb02g035600.3.209.308	Sb02g035600.3.209.308	Sb02g035600.2.224.323
	Sb02g035600.2.224.323
Thellungiella halophila	Thhalv10002460m	Thhalv10024842m	Thhalv10024989m	Thhalv10016419m	Thhalv10028560m
	Thhalv10013225m	Thhalv10001342m	Thhalv10001222m	Thhalv10013215m
Vitis vinifera	GSVIVT01013272001	GSVIVT01030642001	GSVIVT01001863001	GSVIVT01026922001	GSVIVT01014681001
	GSVIVT01026920001	GSVIVT01036911001	GSVIVT01019605001	GSVIVT01017808001
Volvox carteri	Vocar20007787m	Vocar20012728m

CAZyme Information