| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015034 |
| Family | CBM43 |
| Protein Properties | Length: 495 Molecular Weight: 54767.1 Isoelectric Point: 4.384 |
| Chromosome | Chromosome/Scaffold: 07 Start: 4085875 End: 4087359 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 380 | 460 | 6.5e-25 |
| WCVLDTNAFNLDDLADNVDYACSLSDCTALGYGSSCNHLTNVGNASYAFNMYYQMHDQKTWDCDFLGLGLITDEDPSDDLC | |||
| GH17 | 37 | 357 | 0 |
| VGVNWGTMASHQLPPENVVKMLKDNGFTKLKLFEADQNILNALTGSDIEVMIGIPNRLLKEVAQDPALAASWVEENVTAYSYNGGVNIKYIAVGNEPFLQ TYNGTYVEFTLPALVNIQKALEEAGLKNVRVTVPFNADIYFSPESNPVPSAGDFRPELRDVTIEIINFLYTHDSPFTVNIYPFLSLYGNAYFPVDFAFFD GSNNSLRDGDLVYNNVFDANLDTLVCAMERYSFLGMKIIVGEVGWPTDGDKNANAKSAKRFNQGMVKHAMSGNGTPARKGVIMDVYLFSLVDEDAKSIAP GTFERHWGIFEFDGRPKYELD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 495 Download |
| MAEQRSRSTK TFFSHQMILC LFLVSQVSIA SCSNTSVGVN WGTMASHQLP PENVVKMLKD 60 NGFTKLKLFE ADQNILNALT GSDIEVMIGI PNRLLKEVAQ DPALAASWVE ENVTAYSYNG 120 GVNIKYIAVG NEPFLQTYNG TYVEFTLPAL VNIQKALEEA GLKNVRVTVP FNADIYFSPE 180 SNPVPSAGDF RPELRDVTIE IINFLYTHDS PFTVNIYPFL SLYGNAYFPV DFAFFDGSNN 240 SLRDGDLVYN NVFDANLDTL VCAMERYSFL GMKIIVGEVG WPTDGDKNAN AKSAKRFNQG 300 MVKHAMSGNG TPARKGVIMD VYLFSLVDED AKSIAPGTFE RHWGIFEFDG RPKYELDLSG 360 KGDDKTLVPV QDVKYLPKTW CVLDTNAFNL DDLADNVDYA CSLSDCTALG YGSSCNHLTN 420 VGNASYAFNM YYQMHDQKTW DCDFLGLGLI TDEDPSDDLC EFPVMIDTGN SPRLQPLSSR 480 VLAMVIVILV LPLL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 1.0e-5 | 274 | 349 | 76 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 5.0e-16 | 379 | 448 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 9.0e-30 | 379 | 462 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-75 | 37 | 357 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28113.1 | 0 | 4 | 493 | 515 | 975 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_189076.1 | 0 | 1 | 494 | 1 | 500 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002281500.1 | 0 | 18 | 491 | 11 | 485 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324967.1 | 0 | 35 | 471 | 7 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515573.1 | 0 | 18 | 491 | 16 | 488 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 37 | 359 | 3 | 315 | A Chain A, The 1.9 Angstrom Crystal Structure Of E. Coli Murg |
| PDB | 3ur8_A | 0 | 37 | 359 | 3 | 315 | A Chain A, The 1.9 Angstrom Crystal Structure Of E. Coli Murg |
| PDB | 3ur7_B | 0 | 37 | 359 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 37 | 359 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 37 | 359 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
