| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015070 |
| Family | PL1 |
| Protein Properties | Length: 493 Molecular Weight: 54661.7 Isoelectric Point: 8.2699 |
| Chromosome | Chromosome/Scaffold: 07 Start: 3786463 End: 3791855 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 156 | 358 | 0 |
| RPLWIVFKRDMVIILKQELIMNSFKTIDGRGVNVAIAGGACITIQYVTNIIIHGINIHDCRRTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNS LSNCADGLIDAIMGSTAITISNNYLTHHNEVMLMGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNR FLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 493 Download |
| MAVSRNLLAL SASLLVLAFF VCVNASTRAH ETEELKSQSL TNSSTADNLS DSAWNEHAVE 60 NPEEVAALVD MTIRNSTERR KLGFFSCATG NPIDDCWRCD RNWHLRRKRL ANCAIGFGRN 120 AVGGRDGRYY VVTDPSDNDV INPRPGTLRH AVIQDRPLWI VFKRDMVIIL KQELIMNSFK 180 TIDGRGVNVA IAGGACITIQ YVTNIIIHGI NIHDCRRTGN AMVRSSPSHY GWRTMADGDA 240 ISIFGSSHIW IDHNSLSNCA DGLIDAIMGS TAITISNNYL THHNEVMLMG HSDSYTRDKV 300 MQVTIAYNHF GEGLIQRMPR CRHGYFHVVN NDYTHWVMYA IGGSANPTIN SQGNRFLAPA 360 NPFAKEVTKR VGSWQGEWKQ WNWRSQGDLM LNGAYFTRSG AATPASYARA SSLGAKPSSV 420 VSMLTYSSGA LKCRIGFSDL EDFWDNLPVS RLKYNALDDF PGSLPDDFHL SQGARNTRAS 480 QSPLYSEIKA LI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-26 | 178 | 419 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-69 | 171 | 356 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-80 | 165 | 359 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX88800.1 | 0 | 1 | 436 | 1 | 434 | ripening-related pectate lyase [Mangifera indica] |
| DDBJ | BAB01216.1 | 0 | 4 | 435 | 5 | 436 | pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_187357.1 | 0 | 1 | 436 | 1 | 413 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_189110.1 | 0 | 4 | 437 | 5 | 438 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002521130.1 | 0 | 1 | 436 | 1 | 438 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 91 | 431 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 91 | 431 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-16 | 160 | 358 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000001 | 174 | 356 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.0000000000003 | 181 | 368 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
