| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015093 |
| Family | GH16 |
| Protein Properties | Length: 474 Molecular Weight: 55098 Isoelectric Point: 8.7261 |
| Chromosome | Chromosome/Scaffold: 07 Start: 3534467 End: 3538327 |
| Description | xyloglucan endotransglucosylase/hydrolase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH16 | 220 | 393 | 6.2e-26 |
| NYVVKWGQGHISTLHSGKEVDLYMDQSSGAGFESKNIYGSGLFQMRIKVPGGNSGGVVTAFYLTSLGSNHDEIDFEFLGNNDGKPITLQTNIFANGEGNR EERFLLWFNPIKHYHTYGILWNPYQIVFYVDNIPIRVYKNQNGVNYPSKPMQVEASLWNGDAWATDGGRTKINY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 474 Download |
| MNIFRLAGDM THLASVLVLL LKIHTIKSCA GVSLRTQELY AIVFATRYLD IFTSFVSVYN 60 TFMKLVFLGS SFSIVWYMRY HKAVHRTYDR EQDTFRHWFL VLPCLVLALL IHEKFTFLEV 120 LWTFSLYLEA VAILPQLVLL QRTRNIDNLT GQYIFLLGGY RGLYILNWIY RYFTEPHFVH 180 WITWIAGLVQ TLLYADFFYY YFLRFIGGRG VEKYVTFGQN YVVKWGQGHI STLHSGKEVD 240 LYMDQSSGAG FESKNIYGSG LFQMRIKVPG GNSGGVVTAF YLTSLGSNHD EIDFEFLGNN 300 DGKPITLQTN IFANGEGNRE ERFLLWFNPI KHYHTYGILW NPYQIVFYVD NIPIRVYKNQ 360 NGVNYPSKPM QVEASLWNGD AWATDGGRTK INYAYSPFIA HFQDFSGLSG CYIDGRSDNV 420 ATCGSSNYWW NGGKYQRLSG YEQKIYEHIR KKYMNYDYCT DRSKYQSPPR ECY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5196 | ERD2 | 1.0e-53 | 1 | 191 | 192 | + ER lumen protein retaining receptor [Intracellular trafficking and secretion] | ||
| pfam00810 | ER_lumen_recept | 1.0e-62 | 28 | 172 | 145 | + ER lumen protein retaining receptor. | ||
| pfam00722 | Glyco_hydro_16 | 7.0e-70 | 217 | 395 | 181 | + Glycosyl hydrolases family 16. | ||
| PLN03161 | PLN03161 | 4.0e-78 | 217 | 473 | 264 | + Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional | ||
| cd02176 | GH16_XET | 3.0e-140 | 212 | 472 | 265 | + Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006073 | cellular glucan metabolic process |
| GO:0006621 | protein retention in ER lumen |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64352.1 | 0 | 1 | 212 | 1 | 212 | ER lumen retaining receptor (HDEL receptor), putative [Arabidopsis thaliana] |
| GenBank | ABK28571.1 | 0 | 204 | 473 | 22 | 290 | unknown [Arabidopsis thaliana] |
| DDBJ | BAB01889.1 | 0 | 1 | 212 | 1 | 214 | ER lumen protein-retaining receptor-like protein [Arabidopsis thaliana] |
| RefSeq | NP_189141.1 | 0 | 204 | 473 | 22 | 290 | XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3); hydrolase, acting on glycosyl bonds / xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana] |
| RefSeq | NP_566758.1 | 0 | 1 | 212 | 1 | 212 | ER lumen protein retaining receptor, putative / HDEL receptor, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1un1_B | 0 | 215 | 472 | 15 | 272 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
| PDB | 1un1_A | 0 | 215 | 472 | 15 | 272 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
| PDB | 1umz_B | 0 | 215 | 472 | 15 | 272 | A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. |
| PDB | 1umz_A | 0 | 215 | 472 | 15 | 272 | A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. |
| PDB | 2vh9_B | 0 | 217 | 472 | 43 | 290 | A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide |
