| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015155 |
| Family | GT19 |
| Protein Properties | Length: 489 Molecular Weight: 54416.5 Isoelectric Point: 9.3508 |
| Chromosome | Chromosome/Scaffold: 07 Start: 3014748 End: 3016954 |
| Description | transferases, transferring glycosyl groups |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT19 | 41 | 173 | 1.3004e-42 |
| VFIVAGEVSGDNIGSRLMCSLKKLSPLPLRFHGVGGSMMCKQGLTSLFPMEDLAVMGLWELLPHLYKFRVKLKETIDAAAMFKPHVVVTVDSKGFSFRLL KQLRARYNQQHLENSAVHFHYVAPSFWAWKGGE | |||
| GT19 | 191 | 448 | 0 |
| HFHYVAPSFWAWKGGESRLGGLSEFVDHLFCILPNEESVCREHGVEATFVGHPLLEDINLVRTCKPQESKLEGLSKYSLPSDSTVISVLPGSRLQEVERM LPIFSKAMKLLKDPFPNLVTLIHVASNSQVDHYIGKSLPQWPVPAILVPSGSTQLKYDAFGVSQAALCTSGTVAVELQLACLPSLVAYRAHFLTELFIRY KAKIPYISLPNILLDSPIIPEALFRACNPSNLALILERLLLDEEMRGKQVVAAEKLAR | |||
| Full Sequence |
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| Protein Sequence Length: 489 Download |
| MMLRVSKIKL GFPLLTQRLA SFEARKKSVI EKAAVDGELR VFIVAGEVSG DNIGSRLMCS 60 LKKLSPLPLR FHGVGGSMMC KQGLTSLFPM EDLAVMGLWE LLPHLYKFRV KLKETIDAAA 120 MFKPHVVVTV DSKGFSFRLL KQLRARYNQQ HLENSAVHFH YVAPSFWAWK GGESRLGARY 180 NQQHLENSAV HFHYVAPSFW AWKGGESRLG GLSEFVDHLF CILPNEESVC REHGVEATFV 240 GHPLLEDINL VRTCKPQESK LEGLSKYSLP SDSTVISVLP GSRLQEVERM LPIFSKAMKL 300 LKDPFPNLVT LIHVASNSQV DHYIGKSLPQ WPVPAILVPS GSTQLKYDAF GVSQAALCTS 360 GTVAVELQLA CLPSLVAYRA HFLTELFIRY KAKIPYISLP NILLDSPIIP EALFRACNPS 420 NLALILERLL LDEEMRGKQV VAAEKLARLL HPSESGMSSK LVHYSDLDSH RYTPSNLAAS 480 TILSYAKR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK01021 | lpxB | 3.0e-38 | 12 | 411 | 407 | + lipid-A-disaccharide synthase; Reviewed | ||
| TIGR00215 | lpxB | 5.0e-45 | 41 | 421 | 385 | + lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| pfam02684 | LpxB | 5.0e-68 | 41 | 462 | 426 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
| PRK00025 | lpxB | 2.0e-91 | 39 | 421 | 386 | + lipid-A-disaccharide synthase; Reviewed | ||
| COG0763 | LpxB | 4.0e-95 | 39 | 421 | 385 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008915 | lipid-A-disaccharide synthase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI28885.1 | 0 | 33 | 487 | 2 | 430 | unnamed protein product [Vitis vinifera] |
| GenBank | EEC71491.1 | 0 | 29 | 483 | 34 | 463 | hypothetical protein OsI_03760 [Oryza sativa Indica Group] |
| RefSeq | NP_178535.2 | 0 | 1 | 488 | 1 | 455 | transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002458499.1 | 0 | 29 | 483 | 9 | 439 | hypothetical protein SORBIDRAFT_03g034785 [Sorghum bicolor] |
| RefSeq | XP_002528957.1 | 0 | 27 | 487 | 34 | 468 | Lipid-A-disaccharide synthase, putative [Ricinus communis] |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| lipid IVA biosynthesis | LIPIDADISACCHARIDESYNTH-RXN | EC-2.4.1.182 | lipid-A-disaccharide synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EV196281 | 266 | 2 | 267 | 0 |
| FY429474 | 300 | 2 | 295 | 0 |
| DK475923 | 254 | 2 | 255 | 0 |
| DK458146 | 259 | 2 | 254 | 0 |
| DK547548 | 209 | 281 | 489 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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