| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015210 |
| Family | GH28 |
| Protein Properties | Length: 407 Molecular Weight: 44028.7 Isoelectric Point: 5.0292 |
| Chromosome | Chromosome/Scaffold: 10 Start: 3410932 End: 3414582 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 55 | 324 | 0 |
| KDACAWKGRSKVYVPKGAFCLGGVTFAGPCNCQTYFVIDGVVLAPTNNDDIKKETWVNFAYINYLTISGSGTIDGQGKESWPLNNCNKNDNCPRLAVSMG FDFVNNSRIEGITSLNSKAGHFNFYFVDNFTIAGVNITAPGDSPNTDGIKVGFSSNINISNTHIGTGDDCIAILSGNTNLFIYNVTCGPGHGISVGSLGK NKTWESSATEIAISNFLYENIQMIDAQSPINIDQQYCPYPPCKKKGDSHVQIQNVTLNNIWGSSMNKEAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 407 Download |
| MASINTAFKA LCLSLLFVTV SSSPDTEPKV FDVQSYGAKG DGTADNANAF TNAWKDACAW 60 KGRSKVYVPK GAFCLGGVTF AGPCNCQTYF VIDGVVLAPT NNDDIKKETW VNFAYINYLT 120 ISGSGTIDGQ GKESWPLNNC NKNDNCPRLA VSMGFDFVNN SRIEGITSLN SKAGHFNFYF 180 VDNFTIAGVN ITAPGDSPNT DGIKVGFSSN INISNTHIGT GDDCIAILSG NTNLFIYNVT 240 CGPGHGISVG SLGKNKTWES SATEIAISNF LYENIQMIDA QSPINIDQQY CPYPPCKKKG 300 DSHVQIQNVT LNNIWGSSMN KEAVREGVLA ASLDKCLSPP DLFVEFIIPR WLLFEGLKQY 360 NEVEAWVHSD EDVVVRRVCP GCWLLVLGSV LVCVFDAIRR GSGFSS* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-59 | 8 | 325 | 345 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-60 | 28 | 324 | 328 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-66 | 14 | 325 | 345 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-66 | 58 | 324 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-91 | 31 | 324 | 323 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_173158.1 | 0 | 4 | 325 | 5 | 352 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175003.1 | 0 | 1 | 324 | 1 | 352 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 1 | 324 | 1 | 352 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175005.1 | 0 | 1 | 324 | 1 | 352 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_193112.2 | 0 | 1 | 324 | 1 | 352 | polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 0.000000001 | 119 | 317 | 71 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1bhe_A | 0.000000007 | 121 | 290 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.00000004 | 119 | 317 | 74 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.00000004 | 119 | 317 | 74 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.00000004 | 119 | 317 | 74 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
