| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015341 |
| Family | PL1 |
| Protein Properties | Length: 432 Molecular Weight: 47601.5 Isoelectric Point: 7.8033 |
| Chromosome | Chromosome/Scaffold: 10 Start: 2404166 End: 2407730 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 143 | 348 | 0 |
| IQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQYVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVWID HNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKAMQVTIAYNHFGVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GSRYAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 432 Download |
| MAVLPTWILA MMCLLFFVGA MENSTHDKIS SLSSSDENEW NTHAVTNPDE VADEVIALAE 60 MSVRNHTERR KLGYFTCGTG NPIDDCWRCD ANWHKNRKRL ADCGIGFGRN AIGGRDGRFY 120 VVTDPNDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH 180 IANGGCITIQ YVTNVIVHGL HIHDCRPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW 240 IDHNSLSHCA DGLVDAVMGS TAITISNNHM THHNEVMLLG HSDSYTRDKA MQVTIAYNHF 300 GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGSRYAAPK NPFAKEVTKR 360 VDTPASHWKG WNWRTEGDLL QNGAYFTASG AASSGSYARA SSLAAKSSSL VATITNDAGA 420 LPCRRGRQCT S* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-26 | 161 | 332 | 182 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-69 | 161 | 346 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-78 | 155 | 350 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADD62392.1 | 0 | 21 | 429 | 41 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 21 | 429 | 21 | 425 | pectate lyase [Prunus persica] |
| RefSeq | NP_563715.1 | 0 | 22 | 431 | 22 | 431 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567409.1 | 0 | 37 | 429 | 77 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002297822.1 | 0 | 1 | 429 | 1 | 450 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 81 | 421 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 81 | 421 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-16 | 150 | 337 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000001 | 159 | 323 | 119 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.00000000001 | 171 | 323 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
