| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015416 |
| Family | CE8 |
| Protein Properties | Length: 279 Molecular Weight: 30581.8 Isoelectric Point: 8.7874 |
| Chromosome | Chromosome/Scaffold: 10 Start: 1901502 End: 1903060 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 190 | 273 | 1.6e-24 |
| FMDCQIISMANQVSPGSKSINGAVTANGRNSKDENSGFSFVNCSIGGTGHVWLGRAWRPYSRVIFVSTFMTDVIAPEGWNNFND | |||
| CE8 | 97 | 190 | 1.9e-27 |
| CVDKNGCCNFTTVQSAVDAIGNFSERRNVIWINSGMYYEKVAIPKTKPNITLQGQGFETTSIAWNDTAYSANGTFYCASVQVFGSQFLAKNISF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 279 Download |
| MKSPCILLTL SIVIAIIAIL ASQTLFSTPP RVFIHNPFDI LYGIKAISYS AITSVCSHHH 60 HHHHRRKPSH SKKKISICGD FPKNIPPPDT DTTSYLCVDK NGCCNFTTVQ SAVDAIGNFS 120 ERRNVIWINS GMYYEKVAIP KTKPNITLQG QGFETTSIAW NDTAYSANGT FYCASVQVFG 180 SQFLAKNISF MDCQIISMAN QVSPGSKSIN GAVTANGRNS KDENSGFSFV NCSIGGTGHV 240 WLGRAWRPYS RVIFVSTFMT DVIAPEGWNN FNDPSRDA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 3.0e-32 | 98 | 278 | 244 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 2.0e-33 | 89 | 276 | 256 | + pectinesterase | ||
| PLN02432 | PLN02432 | 3.0e-34 | 87 | 276 | 249 | + putative pectinesterase | ||
| PLN02304 | PLN02304 | 2.0e-53 | 190 | 278 | 89 | + probable pectinesterase | ||
| PLN02304 | PLN02304 | 5.0e-77 | 22 | 192 | 176 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB71446.1 | 0 | 18 | 236 | 16 | 218 | Similar to Prunus pectinesterase (gb |
| GenBank | AAB71446.1 | 0 | 162 | 278 | 221 | 340 | Similar to Prunus pectinesterase (gb |
| GenBank | ABN08648.1 | 0 | 10 | 277 | 9 | 340 | Pectinesterase [Medicago truncatula] |
| RefSeq | NP_172023.1 | 0 | 18 | 236 | 16 | 220 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_172023.1 | 0 | 162 | 278 | 223 | 342 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 5e-16 | 96 | 268 | 9 | 249 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0.0000001 | 97 | 272 | 6 | 249 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
