| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015446 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 41570.5 Isoelectric Point: 9.7167 |
| Chromosome | Chromosome/Scaffold: 10 Start: 1715636 End: 1717623 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 380 | 0 |
| WQAACVSAYSATVMVPTGTFLVKGITFTGPCKSKLKFQVAGTVVAPADYWAFGNSGYWILFNRVSKMSLVGGTFDARASGFWACRKSGQNCPPGVRSITF NAAKDVVISGVKSMNSQMSHMTLKGCTNVAVRNIKLVAPGNSPNTDGFGVQSSTGITLTGSTVQTGDDCVSIGPGTRNFLISKLNCGPGHGVSIGSLAKT LNEDGVENVTVSNSVFTGTTNGVRIKSWARASTGFVNKVFFQNLIMKNVQNPIIIDQNYCPTHQGCPTEHSGVKISQVTYRNIQGTSATQQAMNLACSKT NPCTGITLQDIKLTYNKGTPATSYCFNAAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MTKSQITLAI LFTLLTFIDV STSSSNVFNV VSFGAKPDGV TDSTAAFLKA WQAACVSAYS 60 ATVMVPTGTF LVKGITFTGP CKSKLKFQVA GTVVAPADYW AFGNSGYWIL FNRVSKMSLV 120 GGTFDARASG FWACRKSGQN CPPGVRSITF NAAKDVVISG VKSMNSQMSH MTLKGCTNVA 180 VRNIKLVAPG NSPNTDGFGV QSSTGITLTG STVQTGDDCV SIGPGTRNFL ISKLNCGPGH 240 GVSIGSLAKT LNEDGVENVT VSNSVFTGTT NGVRIKSWAR ASTGFVNKVF FQNLIMKNVQ 300 NPIIIDQNYC PTHQGCPTEH SGVKISQVTY RNIQGTSATQ QAMNLACSKT NPCTGITLQD 360 IKLTYNKGTP ATSYCFNAAG TNLGVIQPTS CLNK* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 8.0e-83 | 34 | 388 | 362 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-84 | 55 | 378 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-94 | 34 | 391 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 1.0e-99 | 34 | 393 | 367 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 0 | 34 | 394 | 361 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172056.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_172057.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181917.1 | 0 | 8 | 392 | 10 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002309713.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-23 | 134 | 364 | 143 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-19 | 29 | 381 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 1e-18 | 41 | 340 | 6 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-18 | 41 | 340 | 6 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-18 | 41 | 340 | 6 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
