| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra015636 |
| Family | GH3 |
| Protein Properties | Length: 770 Molecular Weight: 83876.8 Isoelectric Point: 8.4834 |
| Chromosome | Chromosome/Scaffold: 07 Start: 21623993 End: 21627959 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 71 | 327 | 0 |
| IPRLGVPAYQWWSEALHGVADVGPTPGIRFNGTVKAATSFPQVILTAASFDSYLWFRIAQVIGKEARGVYNAGQAKGMTFWAPNINIFRDPRWGRGQETP GEDPTVTGAYAVAYVRGLQGDSFDGKKTLSGGHLQASACCKHFTAYDLDRWKGITRYVFNAQVSLADMAETYQPPFKKCIEEGRASGIMCAYNRVNGIPS CADPNLLTRTARGLWHFNGYITSDCDAVSIIYDDQGYAKTPEDAVADVLKAGMDVNC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 770 Download |
| MAKMILLLLI LFFLHGVDSS PPHACDASNP TTKLFQFCRT DLSVNRRARD IVSRLTVDEK 60 ISQLVNSAPG IPRLGVPAYQ WWSEALHGVA DVGPTPGIRF NGTVKAATSF PQVILTAASF 120 DSYLWFRIAQ VIGKEARGVY NAGQAKGMTF WAPNINIFRD PRWGRGQETP GEDPTVTGAY 180 AVAYVRGLQG DSFDGKKTLS GGHLQASACC KHFTAYDLDR WKGITRYVFN AQVSLADMAE 240 TYQPPFKKCI EEGRASGIMC AYNRVNGIPS CADPNLLTRT ARGLWHFNGY ITSDCDAVSI 300 IYDDQGYAKT PEDAVADVLK AGMDVNCGSY LQNHTKSALQ QKKVSEADIN RALINLFSVR 360 IRLGLFNGDP TKLTYGNISP NDVCSPSHQA LALEAARNGI VLLKNPLKLL PLSKRSVSLA 420 VIGPNAHVAK TLLGNYAGPP CKNVTPLDAI RGYVKNAVYH KGCDSVACSN AAVEQAVAIA 480 RSAERVVLIM GLDQTQEKED MDRVDLSLPG KQRELITSVA KAAKRPVVLV LICGGPVDVS 540 FAKDNDKIGS IVWAGYPGEA GGVALAEILF GDHNPGGRLP VTWYPQNFVN VKMTDMRMRS 600 SSSGYPGRTY RFYKGPKVFE FGHGLSYTTY SYSFKSLTQN TLYLNQSKPQ TNSDSLRYAL 660 VSEMGRESCD TAKTKVSVMV ENQGEMAGKH PVLMFMRHEK GGEDGTRAEK QLVGFQSVVL 720 SKGEKGEVEF EVGVCEHLSR ANEIGVMVVE EGKYFLTVGD SELPLTVNV* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 1.0e-47 | 66 | 430 | 373 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-54 | 420 | 629 | 217 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-56 | 56 | 352 | 327 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 1.0e-69 | 50 | 720 | 750 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 18 | 769 | 765 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_177929.1 | 0 | 1 | 769 | 1 | 767 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | XP_002285805.1 | 0 | 4 | 769 | 8 | 774 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302285.1 | 0 | 17 | 767 | 21 | 771 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002306583.1 | 0 | 17 | 769 | 21 | 745 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002513892.1 | 0 | 5 | 769 | 11 | 774 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 108 | 759 | 91 | 722 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
| PDB | 3u48_A | 0 | 108 | 759 | 91 | 722 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
| PDB | 3u4a_B | 0 | 108 | 759 | 91 | 722 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
| PDB | 3u4a_A | 0 | 108 | 759 | 91 | 722 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
| PDB | 2x41_A | 2e-38 | 47 | 761 | 3 | 701 | A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From Streptomyces Venezuelae In Complex With D-glucose. |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
