| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016163 |
| Family | AA1 |
| Protein Properties | Length: 540 Molecular Weight: 61003.7 Isoelectric Point: 9.5566 |
| Chromosome | Chromosome/Scaffold: 07 Start: 19106305 End: 19108704 |
| Description | Cupredoxin superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA1 | 58 | 361 | 1.3e-23 |
| TVPGPTIEAVYGVSTYVTWRNHLPSSHILPWDPTISPAIAKRGGIPTVVHLHGGIHEPSSDGNADSWFTAGFKETGTKWTKPTYHYVNKQQPGNMWYHDH AAGLTRVNLLAGLLGAYILRHSSVETPLNLPTGREFDRPLIVFDRSFRKDGSIYMNATGNNPTIHPQWQPEYFGDAIVVNGKAWPRLTVRRRKYRFRIIN ASNARFFRFFFSNGLDFIVIGSDSAYLAKPVSTKSVLLAPSEIVDVVVDFSKSTSKTAILANNAPYPYPSGDPVTDENSKVMKFTIKHKSETDTSSMPTK LVQY | |||
| Full Sequence |
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| Protein Sequence Length: 540 Download |
| MFVDKLPHIP TLHGFHIVNG VLKPKSLQIG MFFKKWKFHR DLPATPVFAY GVSKHKATVP 60 GPTIEAVYGV STYVTWRNHL PSSHILPWDP TISPAIAKRG GIPTVVHLHG GIHEPSSDGN 120 ADSWFTAGFK ETGTKWTKPT YHYVNKQQPG NMWYHDHAAG LTRVNLLAGL LGAYILRHSS 180 VETPLNLPTG REFDRPLIVF DRSFRKDGSI YMNATGNNPT IHPQWQPEYF GDAIVVNGKA 240 WPRLTVRRRK YRFRIINASN ARFFRFFFSN GLDFIVIGSD SAYLAKPVST KSVLLAPSEI 300 VDVVVDFSKS TSKTAILANN APYPYPSGDP VTDENSKVMK FTIKHKSETD TSSMPTKLVQ 360 YPHADVSKSV RTRYIAMFEY VSSADEPTHL YINGLPYNAP VTETPKIGTS EVWEVINLTE 420 DNHPLHIHLG LFKVLEQTAL VETEKFTDCM TEKNDAVKCQ ISKYARGNKT AVTAHERGWK 480 NVFKMMPGHV TKILVRFSYV HSNESYYSFD ATQEPGYVYH CHILDHEDNM MMRPFEMVK* 540 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07732 | Cu-oxidase_3 | 5.0e-8 | 58 | 177 | 124 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| PRK10883 | PRK10883 | 8.0e-9 | 146 | 309 | 171 | + FtsI repressor; Provisional | ||
| PRK10965 | PRK10965 | 1.0e-10 | 392 | 535 | 148 | + multicopper oxidase; Provisional | ||
| PRK10965 | PRK10965 | 5.0e-11 | 60 | 309 | 258 | + multicopper oxidase; Provisional | ||
| COG2132 | SufI | 4.0e-34 | 57 | 538 | 490 | + Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG51692.1 | 0 | 1 | 538 | 44 | 590 | AC016972_11 spore coat protein-like protein; 24980-21957 [Arabidopsis thaliana] |
| GenBank | AAL32542.1 | 0 | 1 | 538 | 44 | 580 | spore coat protein-like protein [Arabidopsis thaliana] |
| GenBank | AAM67200.1 | 0 | 1 | 538 | 26 | 562 | spore coat protein-like protein [Arabidopsis thaliana] |
| GenBank | ABG81319.1 | 0 | 1 | 538 | 42 | 580 | low-phosphate root 1 [Arabidopsis thaliana] |
| RefSeq | NP_565008.1 | 0 | 1 | 538 | 44 | 580 | LPR2 (Low Phosphate Root2); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3zdw_A | 0 | 2 | 537 | 6 | 508 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| PDB | 2x88_A | 0 | 2 | 537 | 6 | 508 | A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose |
| PDB | 2x87_A | 0 | 2 | 537 | 6 | 508 | A Chain A, Crystal Structure Of The Reconstituted Cota |
| PDB | 2bhf_A | 0 | 2 | 537 | 6 | 508 | A Chain A, Crystal Structure Of The Reconstituted Cota |
| PDB | 1w8e_A | 0 | 2 | 537 | 6 | 508 | A Chain A, Crystal Structure Of The Reconstituted Cota |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778093 | 519 | 23 | 540 | 0 |
| HO796521 | 458 | 84 | 540 | 0 |
| DK482731 | 230 | 1 | 230 | 0 |
| EX137960 | 216 | 325 | 540 | 0 |
| DK488285 | 212 | 1 | 212 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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