| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016213 |
| Family | GH28 |
| Protein Properties | Length: 468 Molecular Weight: 50457.8 Isoelectric Point: 5.1187 |
| Chromosome | Chromosome/Scaffold: 07 Start: 18843914 End: 18845956 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 93 | 421 | 0 |
| ACSAPRSVLLVPQGRSYLVNATKFNGPCQENLIIQIDGTIVAPDDPSQWNPRFQRVWLEFSKLQGVIFQGNGVIDGSGTKWWAASCKKNKSNPCIGAPTA LTIESSSNVYVRGLTIRNSQQMHLIIARSNTVRVSRVMVTSPGDSPNTDGIHITASTNVIVQDCKISTGDDCVSIVNASSRIKMKKIYCGPGHGISIGSL GRGNSTATVSAIVLDTAVLKNTTNGLRIKTWQGGNGYVKGVRFENVEMHDVANPIIIDQFYCDSPSTCQNQTSAVHITEIMYRNITGTTKSKNAIKFACS DAVPCSHIVLNNVNLEGNDGKVEAYCNSA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 468 Download |
| MDRLFIFSLL ALLMVTSCRA SGETAYRELD ILGELENLDV PQDDIDDDVT FFDFSLFTSQ 60 FSGKNLVNVD SFGAAGDGVS DDTQAFVSAW KIACSAPRSV LLVPQGRSYL VNATKFNGPC 120 QENLIIQIDG TIVAPDDPSQ WNPRFQRVWL EFSKLQGVIF QGNGVIDGSG TKWWAASCKK 180 NKSNPCIGAP TALTIESSSN VYVRGLTIRN SQQMHLIIAR SNTVRVSRVM VTSPGDSPNT 240 DGIHITASTN VIVQDCKIST GDDCVSIVNA SSRIKMKKIY CGPGHGISIG SLGRGNSTAT 300 VSAIVLDTAV LKNTTNGLRI KTWQGGNGYV KGVRFENVEM HDVANPIIID QFYCDSPSTC 360 QNQTSAVHIT EIMYRNITGT TKSKNAIKFA CSDAVPCSHI VLNNVNLEGN DGKVEAYCNS 420 AEGFGYGVVH PSADCLDSHD NKGLDPTQYL SETVLVGEDA KNAHDEL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-88 | 62 | 412 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-92 | 55 | 461 | 416 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-100 | 94 | 421 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-116 | 4 | 431 | 433 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-145 | 62 | 438 | 379 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC98004.1 | 0 | 1 | 467 | 1 | 457 | Similar to gb |
| RefSeq | NP_173760.2 | 0 | 1 | 467 | 2 | 460 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_177207.1 | 0 | 1 | 467 | 1 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002317091.1 | 0 | 31 | 440 | 1 | 407 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525360.1 | 0 | 1 | 440 | 1 | 471 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-23 | 162 | 382 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-20 | 165 | 418 | 79 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-20 | 165 | 418 | 79 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-20 | 165 | 418 | 79 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-20 | 165 | 418 | 79 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
