| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016226 |
| Family | CBM57 |
| Protein Properties | Length: 553 Molecular Weight: 60218.1 Isoelectric Point: 8.5125 |
| Chromosome | Chromosome/Scaffold: 07 Start: 18766173 End: 18770450 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM57 | 341 | 509 | 1.3e-24 |
| SINCGGPEIRSVSGALFEKEDEDLGPASFFVSASQRWAASSVGLFAGSSNNIYIATSQSQFVNTLDSELFQSARLSASSLRYYGLGLENGGYTVTIQFAE IQMIGSNTWRGVARRRFDIYVQGKLVEKDFDVRGTAGGSNLRAVQREYKANVSENYLEVHLFWAGKGTC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 553 Download |
| MMSRLRLYLC LILTVWFLCI ICSVHVVRAQ NRTGASTHPN EARALNSIFA KWKIHAPREW 60 NISGELCSGA AIDDGVTIDS RAYNPLIKCD CNFVNSTICR ITALNLGQNY LTGPLSRAIG 120 NLTRMEWLTF GINALSGPIP KEIGLLRELK SLYIDSSGLS GEIPLSFANL VDLQVVWMMD 180 LEVTGRIPDF IGNWTKLVSL RILGTGLSGP IPSSFSNLAS LTELRLGDIS NGSSSLEFIK 240 TMKSLSIFVD DLCCRVLRNS NLEGTIPSNI GEYSSLLQVD VSYNNLSGSL PSWVSLPNLK 300 LNLVANNFTL KGLNKRVLPG LKCMQKNFPC NRGKGIYSDF SINCGGPEIR SVSGALFEKE 360 DEDLGPASFF VSASQRWAAS SVGLFAGSSN NIYIATSQSQ FVNTLDSELF QSARLSASSL 420 RYYGLGLENG GYTVTIQFAE IQMIGSNTWR GVARRRFDIY VQGKLVEKDF DVRGTAGGSN 480 LRAVQREYKA NVSENYLEVH LFWAGKGTCC IPIQGAYGPL VSAVSATPDF TPTVVNIPPS 540 KGKNRTGTIV SV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 3.0e-18 | 104 | 327 | 225 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 1.0e-18 | 100 | 300 | 208 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-20 | 104 | 325 | 236 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-25 | 98 | 291 | 200 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 2.0e-54 | 340 | 524 | 187 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF02838.1 | 0 | 42 | 545 | 15 | 631 | AC009894_9 Similar to serine/threonine kinases [Arabidopsis thaliana] |
| Swiss-Prot | C0LGH3 | 0 | 2 | 544 | 1 | 632 | Y5614_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g56140; Flags: Precursor |
| RefSeq | NP_176008.4 | 0 | 26 | 545 | 1 | 650 | kinase [Arabidopsis thaliana] |
| RefSeq | NP_176009.1 | 0 | 2 | 545 | 1 | 634 | leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] |
| RefSeq | NP_564709.1 | 0 | 2 | 544 | 1 | 631 | leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ogq_A | 0.000000000000002 | 107 | 312 | 85 | 306 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 1ogq_A | 0.00005 | 210 | 299 | 67 | 151 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 0.0000000000002 | 96 | 226 | 412 | 542 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 0.00000003 | 101 | 292 | 393 | 553 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rj0_A | 0.0000002 | 101 | 292 | 222 | 433 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
