| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016272 |
| Family | AA7 |
| Protein Properties | Length: 338 Molecular Weight: 38291 Isoelectric Point: 5.5821 |
| Chromosome | Chromosome/Scaffold: 08 Start: 17642549 End: 17643562 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 1 | 330 | 7.10038e-42 |
| MRKYGLTVDNVVDALIVDVNGKLLNRSTMGEDLFWAIRGGGGGSFGVILSWKINLVDVPEILTVFRVNKTLEQGGIDVLYKWQLVSSKLLDGLFLRALSQ VVNRTITVEFYAQFLGRADELVAIVNQSLPELGLKRQDCLEMSWLNTTLFWEDLPVGTPTSVLLDRPSKPEKFFKSKSDYVKKPIPKEGIKKLWEALLEF NNNNIVYMQWNPYGGVMDTVPAAATPFPHRKGNLFEVQYYTSWLDANATMGSLDMMKKLYEVAEPYVSSNPREAFLNYRDIDIGSNPSNETNVEEAEIYG SKYFVGNLKRLMEVKAKYDPENFFKNEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 338 Download |
| MRKYGLTVDN VVDALIVDVN GKLLNRSTMG EDLFWAIRGG GGGSFGVILS WKINLVDVPE 60 ILTVFRVNKT LEQGGIDVLY KWQLVSSKLL DGLFLRALSQ VVNRTITVEF YAQFLGRADE 120 LVAIVNQSLP ELGLKRQDCL EMSWLNTTLF WEDLPVGTPT SVLLDRPSKP EKFFKSKSDY 180 VKKPIPKEGI KKLWEALLEF NNNNIVYMQW NPYGGVMDTV PAAATPFPHR KGNLFEVQYY 240 TSWLDANATM GSLDMMKKLY EVAEPYVSSN PREAFLNYRD IDIGSNPSNE TNVEEAEIYG 300 SKYFVGNLKR LMEVKAKYDP ENFFKNEQSI PPARVKQ* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 4.0e-5 | 2 | 333 | 356 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 4.0e-15 | 274 | 331 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK93677.1 | 0 | 1 | 335 | 190 | 529 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_173965.1 | 0 | 1 | 336 | 214 | 552 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_173966.1 | 0 | 1 | 335 | 190 | 527 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_564244.1 | 0 | 1 | 337 | 190 | 531 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_564245.1 | 0 | 1 | 335 | 190 | 529 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 1 | 332 | 167 | 512 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 1 | 332 | 170 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 1 | 332 | 170 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 1 | 332 | 168 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 1 | 332 | 168 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY454239 | 291 | 2 | 286 | 0 |
| EE532191 | 198 | 141 | 338 | 0 |
| DK554687 | 217 | 117 | 333 | 0 |
| CN727065 | 251 | 83 | 329 | 0 |
| DK536138 | 231 | 104 | 334 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
