| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016308 |
| Family | GT31 |
| Protein Properties | Length: 506 Molecular Weight: 58242.7 Isoelectric Point: 6.9074 |
| Chromosome | Chromosome/Scaffold: 08 Start: 17826926 End: 17828734 |
| Description | Galactosyltransferase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT31 | 272 | 453 | 0 |
| ERMAVRKSWMQHKLVRSSKVVARFFVALHARKEVNVDLKKEADYFGDIVIVPYMDHYDLVVLKTVAICEYGVSTVAGKYIMKCDDDTFVRVDAVIQEAEK VKGGDSLYIGNINFYHKPLRTGKWAVTYEEWPEEYYPPYANGPGYILSYDIAKFIVDDFEQQRLRLFKMEDVSMGMWVEKFN | |||
| Full Sequence |
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| Protein Sequence Length: 506 Download |
| MWEGLDSGLI TKPEETNPRN EKCPDMVSVN GPEFLNRSKV LVTVVATPHW AHAEKGDKTV 60 MVTQFMMELQ GLKAVEGEDP PRILHFNPRD RGDWSGRSVI EQNTCYRMQW GSALRCDGRE 120 SSDEEEDSVD GEVKCERWKR DDESKKTWWL KRLMGGRKKI THDWPYPFEE GKLFVLTLRA 180 GMEGYHISVD GRHITSFPYR TGFVLEDATG LAVKGNIDLH SIYASSLPSR NPSFAPQKHL 240 EMQSIWKAPA LLPEKPVELF IGILSAGNHF AERMAVRKSW MQHKLVRSSK VVARFFVALH 300 ARKEVNVDLK KEADYFGDIV IVPYMDHYDL VVLKTVAICE YGVSTVAGKY IMKCDDDTFV 360 RVDAVIQEAE KVKGGDSLYI GNINFYHKPL RTGKWAVTYE EWPEEYYPPY ANGPGYILSY 420 DIAKFIVDDF EQQRLRLFKM EDVSMGMWVE KFNETRPVAV VHSLRFCQFG CIEDYFTAHY 480 QSPRQMICLW DKLQRLGKPQ CCNMR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00908 | Gal-bind_lectin | 1.0e-14 | 64 | 222 | 159 | + Galactoside-binding lectin. Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. Galectins (previously S-lectins) bind exclusively beta-galactosides like lactose. They do not require metal ions for activity. Galectins are found predominantly, but not exclusively in mammals. Their function is unclear. They are developmentally regulated and may be involved in differentiation, cellular regulation and tissue construction. | ||
| cd00070 | GLECT | 3.0e-16 | 42 | 222 | 182 | + Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation. | ||
| pfam01762 | Galactosyl_T | 9.0e-19 | 271 | 451 | 198 | + Galactosyltransferase. This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2. | ||
| pfam00337 | Gal-bind_lectin | 1.0e-19 | 42 | 222 | 181 | + Galactoside-binding lectin. This family contains galactoside binding lectins. The family also includes enzymes such as human eosinophil lysophospholipase (EC:3.1.1.5). | ||
| PLN03133 | PLN03133 | 6.0e-110 | 19 | 505 | 515 | + beta-1,3-galactosyltransferase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79857.1 | 0 | 1 | 505 | 146 | 657 | AC000348_10 T7N9.18 [Arabidopsis thaliana] |
| DDBJ | BAC42872.1 | 0 | 1 | 505 | 146 | 673 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_174032.2 | 0 | 1 | 505 | 146 | 673 | galactosyltransferase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268603.1 | 0 | 1 | 505 | 141 | 670 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002511491.1 | 0 | 1 | 505 | 141 | 670 | galactosyltransferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x50_A | 0.002 | 158 | 225 | 96 | 159 | A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin Domain From Human Galectin-4 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EV567177 | 270 | 136 | 398 | 0 |
| EV567673 | 270 | 136 | 398 | 0 |
| DY268182 | 364 | 48 | 395 | 0 |
| DY971105 | 290 | 164 | 453 | 0 |
| HO799491 | 318 | 86 | 398 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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