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Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra016345 |
Family | GH28 |
Protein Properties | Length: 469 Molecular Weight: 50623 Isoelectric Point: 5.0342 |
Chromosome | Chromosome/Scaffold: 08 Start: 17982410 End: 17984488 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 423 | 0 |
CGMPKSVLLVPQGRTYLVNATKFNGPCETKLVIQIDGKIVAPDEPSNWDPKFQRIWLEFSKLKGVVFQGNGVIDGSGSKWWAASCKKNKSNPCKSAPTAL TIESSSGVKVTGLTIQNSQQMNFIIARSNSVRVSKVMVSSPGDSPNTDGIHITGSTNVVLQDCKIGTGDDCVSIVNASSNIKMKKIYCGPGHGISIGSLG NNNSTGIVTNVVLDTAFLKETTNGLRIKTYQGGSGYVQDVRFTNVQMQDVSNPILIDQFYCDNPTSCQNQTSAVKISQIMYRNITGTTKSEKAIKFACSD TVPCSHIVLNNVNLEGRDGQVEAYCNSA |
Full Sequence |
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Protein Sequence Length: 469 Download |
MMDKLFILSL IGILMVTAYG VAAKMVYTDL DILEKLENFD IPEDDADDYD TKLFDWPSFT 60 SRSSGKNLVN VDTFGAAGDG ISDDTQAFVS AWNKACGMPK SVLLVPQGRT YLVNATKFNG 120 PCETKLVIQI DGKIVAPDEP SNWDPKFQRI WLEFSKLKGV VFQGNGVIDG SGSKWWAASC 180 KKNKSNPCKS APTALTIESS SGVKVTGLTI QNSQQMNFII ARSNSVRVSK VMVSSPGDSP 240 NTDGIHITGS TNVVLQDCKI GTGDDCVSIV NASSNIKMKK IYCGPGHGIS IGSLGNNNST 300 GIVTNVVLDT AFLKETTNGL RIKTYQGGSG YVQDVRFTNV QMQDVSNPIL IDQFYCDNPT 360 SCQNQTSAVK ISQIMYRNIT GTTKSEKAIK FACSDTVPCS HIVLNNVNLE GRDGQVEAYC 420 NSAEGFGYGV IHPSADCLYS HDNKGLDQSH KSEPETVTEE AETGHDEL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-84 | 70 | 425 | 360 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-87 | 100 | 423 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-90 | 67 | 438 | 380 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 9.0e-106 | 69 | 433 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-128 | 58 | 453 | 400 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC98004.1 | 0 | 2 | 468 | 1 | 457 | Similar to gb |
GenBank | AAF79584.1 | 0 | 7 | 468 | 653 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
RefSeq | NP_173760.2 | 0 | 1 | 468 | 1 | 460 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_177207.1 | 0 | 2 | 468 | 1 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002525360.1 | 0 | 2 | 462 | 1 | 493 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 164 | 384 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-20 | 160 | 411 | 72 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 160 | 411 | 72 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 160 | 411 | 72 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 160 | 411 | 72 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |