| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016521 |
| Family | GH28 |
| Protein Properties | Length: 508 Molecular Weight: 56161.3 Isoelectric Point: 9.428 |
| Chromosome | Chromosome/Scaffold: 08 Start: 18864273 End: 18866709 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 125 | 468 | 0 |
| QLNVPPGRWLTAPFNLTSRMTLFLAEDCEILGVEDEKFWTLMPPLPSYGYGRERPGPRYGSLIHGQNLKDVVITGHNGTINGQGQSWWKKHQRRLLNNTR GPLVQIMWSSDIVIANVTLRDSPFWTLHPYDCKNVTIRNVTILAPVTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGWDQFGIAYGRPSTNILIR NLIVRSVISAGVSIGSEMSGGISNVTIENLLIWNSRRGVRIKTAQGRGGYIKNITYKNVTLDNVRVGIVIKTDYNEHADDNYDRKAYPTLSGFSFSGIHG QGVRVPVRIHGSEQIPVRNVTFRDMSVGLTYKKKHIFQCSFVKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 508 Download |
| MVETLLPSRF QSHLQKLDPK RRLLASTIAS HKTLLFAFLW IAAFASVFLW QRSSYIGGYV 60 VGPVAGGRFT VFGKAKPLRP VPRLRPAVFD LKEFGGVGDG VTVNTEAFER AVVEISKLGG 120 GGGGQLNVPP GRWLTAPFNL TSRMTLFLAE DCEILGVEDE KFWTLMPPLP SYGYGRERPG 180 PRYGSLIHGQ NLKDVVITGH NGTINGQGQS WWKKHQRRLL NNTRGPLVQI MWSSDIVIAN 240 VTLRDSPFWT LHPYDCKNVT IRNVTILAPV TGAPNTDGID PDSCEDMVIE DCYISTGDDA 300 IAIKSGWDQF GIAYGRPSTN ILIRNLIVRS VISAGVSIGS EMSGGISNVT IENLLIWNSR 360 RGVRIKTAQG RGGYIKNITY KNVTLDNVRV GIVIKTDYNE HADDNYDRKA YPTLSGFSFS 420 GIHGQGVRVP VRIHGSEQIP VRNVTFRDMS VGLTYKKKHI FQCSFVKGRV IGSIFPRPCE 480 NFDVYDEEGR LVKPATESTV PDIDYDI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-24 | 201 | 479 | 284 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-28 | 93 | 479 | 405 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-34 | 89 | 451 | 371 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-39 | 187 | 467 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-60 | 89 | 405 | 342 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF82228.1 | 0 | 1 | 507 | 1 | 533 | AC069143_4 Contains similarity to a polygalacturonase-like protein gi |
| GenBank | AAL91166.1 | 0 | 1 | 507 | 1 | 506 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_173351.1 | 0 | 1 | 507 | 1 | 506 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324728.1 | 0 | 1 | 506 | 1 | 494 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 1 | 507 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 82 | 448 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 82 | 448 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 82 | 448 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 82 | 448 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-19 | 133 | 451 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
