y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra016548 |
Family | CBM43 |
Protein Properties | Length: 371 Molecular Weight: 39093.5 Isoelectric Point: 5.7648 |
Chromosome | Chromosome/Scaffold: 08 Start: 18997807 End: 19001495 |
Description | 3-phosphoserine phosphatase |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 21 | 102 | 2.9e-29 |
WCVCREGLSEAMLQKTLDYACGAGADCGPIHQNGPCFNPNTVKSHCSYAVNSFFQKKSQSQGTCASAGTATVSASDPSYTTC |
Full Sequence |
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Protein Sequence Length: 371 Download |
MAVVVLAVIL LSMVGHSSGT WCVCREGLSE AMLQKTLDYA CGAGADCGPI HQNGPCFNPN 60 TVKSHCSYAV NSFFQKKSQS QGTCASAGTA TVSASDPSYT TCAFPASASG SGTMTPVTTT 120 PSTRVPTTTN TRPYTVTPST GGGLGIPAGE ILDLWRGVEA VCFDVDSTVC VDEGIDELAE 180 FCGAGKAVAE WTARAMGGSV PFEEALAARL SLFKPSLSKV DEYLQKTPPR LSPGIEELVK 240 KLRANKIDVY LISGGFRQMI NPVASVLGIP RENIFANNLL FGNSGEFVGF DEKEPTSRSG 300 GKAKAVQHIR KGRSYKTMAM IGDGATDLEA RKPGGADMFI CYAGVQLREA VAAQADWLIF 360 NFEPLINSLD * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0560 | SerB | 1.0e-27 | 160 | 360 | 208 | + Phosphoserine phosphatase [Amino acid transport and metabolism] | ||
TIGR01488 | HAD-SF-IB | 9.0e-30 | 160 | 333 | 179 | + Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. This model represents a subfamily of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at a an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences [Unknown function, Enzymes of unknown specificity]. | ||
smart00768 | X8 | 2.0e-37 | 20 | 104 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
TIGR00338 | serB | 2.0e-42 | 160 | 366 | 212 | + phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins [Amino acid biosynthesis, Serine family]. | ||
PLN02954 | PLN02954 | 2.0e-150 | 147 | 370 | 224 | + phosphoserine phosphatase |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0008152 | metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA33806.1 | 0 | 114 | 370 | 39 | 295 | 3-phosphoserine phosphatase [Arabidopsis thaliana] |
RefSeq | NP_973858.1 | 0 | 114 | 370 | 39 | 295 | PSP (3-PHOSPHOSERINE PHOSPHATASE); phosphoserine phosphatase [Arabidopsis thaliana] |
RefSeq | XP_002284065.1 | 0 | 126 | 370 | 47 | 294 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318590.1 | 0 | 92 | 370 | 12 | 295 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514657.1 | 0 | 98 | 370 | 18 | 295 | phosphoserine phosphatase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1l8o_B | 0 | 146 | 370 | 2 | 224 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1l8o_A | 0 | 146 | 370 | 2 | 224 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1l8l_B | 0 | 146 | 370 | 2 | 224 | A Chain A, Molecular Basis For The Local Confomational Rearrangement Of Human Phosphoserine Phosphatase |
PDB | 1l8l_A | 0 | 146 | 370 | 2 | 224 | A Chain A, Molecular Basis For The Local Confomational Rearrangement Of Human Phosphoserine Phosphatase |
PDB | 1nnl_B | 0 | 146 | 370 | 2 | 224 | A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
serine biosynthesis | RXN0-5114 | EC-3.1.3.3 | phosphoserine phosphatase |