| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016700 |
| Family | PL1 |
| Protein Properties | Length: 459 Molecular Weight: 51082.4 Isoelectric Point: 9.1536 |
| Chromosome | Chromosome/Scaffold: 08 Start: 19610600 End: 19612416 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 176 | 371 | 0 |
| GSSMIINLQQELIITSDKTIDGRGARVYIMEGAGLTLQFVNNVIIHNIYVKHVVPKSGGLIRDSEQHIGLRTVSDGDGISLFGATNVWIDHVSMTRCSDG MIDAILGSTAITISNSHFTDHEEVMLFGANDKHVIDKKMQITVAFNHFGKRLDQRMPRCRFGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MTAAVLNIGG YLFVFCLSLL ATLTPHVGAN VAVFDNYWLQ RQGDALKQTI ASFDPNPLNV 60 TDHLNYHVAL AVDATESTNS TRRELSQVRN GRKLKRSGKC VAYNPIDRCW RCNGDWEKNR 120 KKLADCVLGF GRRTTGGKDG PIYVVNDASD DDLINPKPGT LRHAVTRDGP LWIIFGSSMI 180 INLQQELIIT SDKTIDGRGA RVYIMEGAGL TLQFVNNVII HNIYVKHVVP KSGGLIRDSE 240 QHIGLRTVSD GDGISLFGAT NVWIDHVSMT RCSDGMIDAI LGSTAITISN SHFTDHEEVM 300 LFGANDKHVI DKKMQITVAF NHFGKRLDQR MPRCRFGTIH VVNNDYTHWE MYAIGGNMNP 360 TIISQGNRFI APPNEQAKQI TKREYTPYVN WKMWNWQSEG DYFLNGAYFV QSGKQNAWSP 420 KPINPVPKKF AIRPQPGTMV RKLTMDAGAL GCKPGTPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 9.0e-19 | 30 | 85 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 5.0e-27 | 134 | 369 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-67 | 184 | 369 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-78 | 179 | 373 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB69759.1 | 0 | 1 | 458 | 1 | 459 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAN79927.1 | 0 | 23 | 458 | 20 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 23 | 458 | 49 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_172894.1 | 0 | 1 | 458 | 1 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_178375.1 | 0 | 5 | 458 | 1 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 104 | 450 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 104 | 450 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-21 | 134 | 371 | 21 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000001 | 187 | 369 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.000000000000005 | 184 | 449 | 80 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
