y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra016724 |
Family | CBM43 |
Protein Properties | Length: 173 Molecular Weight: 17938.1 Isoelectric Point: 6.9658 |
Chromosome | Chromosome/Scaffold: 08 Start: 19678267 End: 19678976 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 22 | 99 | 3.5e-29 |
CLCKDGVGEKELQTAIDYACGSLADCNPIHDNGPCYQPNNIKSHCDWAVNSYFQKASQVSGSCNFSGTATTNQNPPSN |
Full Sequence |
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Protein Sequence Length: 173 Download |
MRVFLGLLLL LALTKSSSAI YCLCKDGVGE KELQTAIDYA CGSLADCNPI HDNGPCYQPN 60 NIKSHCDWAV NSYFQKASQV SGSCNFSGTA TTNQNPPSNL VTGCIYPSSA STTSPTGTTL 120 TNGTTPAFGP TGTGGFQGNG ASSLVISHVL THCFSSLVFL WGSDVRLGFS HA* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-19 | 21 | 91 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-30 | 21 | 106 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79417.1 | 0 | 19 | 167 | 76 | 252 | AC068197_27 F16A14.5 [Arabidopsis thaliana] |
GenBank | ACU19899.1 | 1.99993e-41 | 1 | 128 | 1 | 118 | unknown [Glycine max] |
RefSeq | NP_172838.2 | 0 | 1 | 172 | 1 | 197 | beta-1,3-glucanase-related [Arabidopsis thaliana] |
RefSeq | NP_671770.1 | 0 | 1 | 139 | 1 | 145 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
RefSeq | XP_002311337.1 | 3.00018e-42 | 1 | 162 | 1 | 184 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.000000000000003 | 14 | 96 | 6 | 89 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |