| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016812 |
| Family | CBM43 |
| Protein Properties | Length: 520 Molecular Weight: 56694.9 Isoelectric Point: 5.8314 |
| Chromosome | Chromosome/Scaffold: 08 Start: 20087690 End: 20089522 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 386 | 467 | 1e-34 |
| CVAMDGVDVKTLQAALDWACGPGRANCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSC | |||
| GH17 | 48 | 367 | 0 |
| VGFNIGTDVSSLLPPPDLVKFLQTQKINHIRLYDADPELLKALSKTKIRVIISVPNNQLLAIGSSNATAASWIGRNVVAYYPETLITAISVGDEVLTTVP SSAPLLLPAIESLYNALVASNLHTQIKVSTPHAASIMMDTFPPSQAYFNQTWLSVISPLLRFLSKTGSPLMMNLYPYYVYMQNKGVVPLDNCLFEPLTPA KEMVDPNTLLHYTNVLDAMVDAAYVSMKNLNISDVAVLVTETGWPSQGDKMEPHATIDNADTYTSNLIKHVFDRTGTPLRPEVTPSVYIYELFNEDKRAP PVSEASWGLFYGNTTPVYLL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 520 Download |
| MPFTSMSSTV PPLLFFLFIV IFNLSISAKS WPLSQENKIQ EQDKDPFVGF NIGTDVSSLL 60 PPPDLVKFLQ TQKINHIRLY DADPELLKAL SKTKIRVIIS VPNNQLLAIG SSNATAASWI 120 GRNVVAYYPE TLITAISVGD EVLTTVPSSA PLLLPAIESL YNALVASNLH TQIKVSTPHA 180 ASIMMDTFPP SQAYFNQTWL SVISPLLRFL SKTGSPLMMN LYPYYVYMQN KGVVPLDNCL 240 FEPLTPAKEM VDPNTLLHYT NVLDAMVDAA YVSMKNLNIS DVAVLVTETG WPSQGDKMEP 300 HATIDNADTY TSNLIKHVFD RTGTPLRPEV TPSVYIYELF NEDKRAPPVS EASWGLFYGN 360 TTPVYLLHVS GSGAFLANDT TNKTYCVAMD GVDVKTLQAA LDWACGPGRA NCSEIQPGES 420 CYQPNNVKGH ASFAFNSYYQ KEGRASGSCD FKGVAMITTT DPSHGSCIFP GSKKVGNQTQ 480 TVVNSTQVAA GETSSRSLLS RGFCASIMIL VTCVLLPFW* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 8.0e-5 | 280 | 360 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 8.0e-25 | 384 | 456 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 3.0e-44 | 384 | 469 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-83 | 48 | 365 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC17632.1 | 0 | 1 | 463 | 1 | 459 | Similar to glucan endo-1,3-beta-D-glucosidase precursor gb |
| EMBL | CBI23232.1 | 0 | 18 | 496 | 17 | 495 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002316541.1 | 0 | 64 | 518 | 5 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002332610.1 | 0 | 64 | 496 | 5 | 437 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518468.1 | 0 | 13 | 501 | 13 | 503 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 48 | 367 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 48 | 370 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 48 | 370 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 48 | 370 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 48 | 370 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
