| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016818 |
| Family | CBM53 |
| Protein Properties | Length: 1314 Molecular Weight: 149318 Isoelectric Point: 6.3988 |
| Chromosome | Chromosome/Scaffold: 08 Start: 20106247 End: 20112972 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 430 | 514 | 6.6e-29 |
| EDIEVFLNKTLSTLSSEPDVLIMGAFNDWRWKSFTRRLEKTEELHGDWRSCLLHIPKEAYKMDFVFFNGQSAYDNNDSKDFCVDV | |||
| CBM53 | 605 | 694 | 3.4e-30 |
| GDEVKIFYNKSSGPLGYAKEVWIHGGFNNWIDGLSIVEKLKADSKSEDWWFAEVIVPVGALVIDWVFADGPPKEAFLYDNNSLQDFHALV | |||
| CBM53 | 767 | 855 | 1e-31 |
| RPVTVFYNPSNTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEAADDGSSHVKTSAKVPLDAYMMDFVFSEKEDGGVFDNRYGLDYHLPV | |||
| GT5 | 866 | 1309 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIIFPKYDCIKYNLVKDLQFNRSYHWGDTEIKVWHGKVEGVSVYFLDPQNGLFQRGCVYGCADD AGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDLYTHYGLIKTRVVFTIHNLEFGAGAIGKAMTFSDKATTVSRTYAKEVAGNSVISPHLYK FHGIVNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGIKSADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFV NLANQLHSTHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLYDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGV DYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYIELYH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1314 Download |
| MVVDAAKRAP TRDSLAEEEQ SSSPMKKQKV EEEEKIYSET HVPELGCKPQ WDVDSYDGRE 60 YESDPEDRKL FSDDEEYDKY RRERRRAFDS KGFIYEPLSG NYPIKDLEAL VYPNVTSREL 120 MTDLANLCVK KLNETEKKTV ELVEIVRVIV LGGGTRKAYI TFMARESLNG PLIEYQAKVV 180 TYAKNLKPPV PILCRPSPIP SVYLHQDIKP TESFGGSSLK SKWRKTSYLV RTRGPFDDSN 240 QRPVFGKEDP LRLDVVIQTP TSLRPGFQQK GRLKINTFIG FLPRPISSLA SLESQYNSNG 300 FLHQITASAD FSRKKQGRMA ASGPKSSAPR GFGRRTTVGS AQKRTQKKND EKDSNATSTV 360 TNEGLGVSNL PEAKADVQKQ ALAEDDVLLE QKLKVERESL RRKEIEALAE EALAKGDRMF 420 VYPLVAKPDE DIEVFLNKTL STLSSEPDVL IMGAFNDWRW KSFTRRLEKT EELHGDWRSC 480 LLHIPKEAYK MDFVFFNGQS AYDNNDSKDF CVDVKGGMDK VEFENFLLEE KWREQEKLAK 540 EEAERERQEE EKRRIEARKA AIEADREQAK VETQKRREML QPALQKAVVS DENVCYIEPK 600 DFKGGDEVKI FYNKSSGPLG YAKEVWIHGG FNNWIDGLSI VEKLKADSKS EDWWFAEVIV 660 PVGALVIDWV FADGPPKEAF LYDNNSLQDF HALVPLRTPE ELYWSEEESL IFRKLQEERR 720 LKEEAMRVKM EKTARLKAET KERTLKKFLL SQKDVVYTEP LEIQAGRPVT VFYNPSNTVL 780 NGKPEVWFRG SFNRWTHRLG PLPPQKMEAA DDGSSHVKTS AKVPLDAYMM DFVFSEKEDG 840 GVFDNRYGLD YHLPVVGGIA KEPPLHIVHI AVEMAPIAKV GGLGDVVTSL SRAVQELNHN 900 VDIIFPKYDC IKYNLVKDLQ FNRSYHWGDT EIKVWHGKVE GVSVYFLDPQ NGLFQRGCVY 960 GCADDAGRFG FFCHAALEFL LQGGFHPDIL HCHDWSSAPV SWLFKDLYTH YGLIKTRVVF 1020 TIHNLEFGAG AIGKAMTFSD KATTVSRTYA KEVAGNSVIS PHLYKFHGIV NGIDPDIWDP 1080 YNDNFIPVPY TSENVVEGKR AAKEELQNRL GIKSADLPLV GIITRLTHQK GIHLIKHAIW 1140 RTLERNGQVV LLGSAPDPRI QNDFVNLANQ LHSTHGDRAR LVLTYDEPLS HLIYAGADFI 1200 LVPSIFEPCG LTQLIAMRYG AVPVVRKTGG LYDTVFDVDH DKERAQAQVL EPNGFSFDGA 1260 DAPGVDYALN RAISAWYDGR EWFNSLCKTV MEQDWSWNRP ALEYIELYHS ARK* 1320 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 2.0e-143 | 865 | 1311 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 3.0e-158 | 865 | 1311 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 1.0e-170 | 865 | 1313 | 488 | + glycogen synthase; Provisional | ||
| PLN02316 | PLN02316 | 0 | 319 | 1313 | 1038 | + synthase/transferase | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 866 | 1310 | 491 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB46391.1 | 0 | 319 | 1313 | 1 | 1025 | soluble starch synthase III [Arabidopsis thaliana] |
| EMBL | CAA64173.1 | 0 | 350 | 1313 | 267 | 1228 | soluble-starch-synthase [Solanum tuberosum] |
| RefSeq | NP_172637.1 | 0 | 319 | 1313 | 1 | 1025 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002305571.1 | 0 | 319 | 1313 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 377 | 1313 | 128 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 865 | 1309 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 865 | 1309 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 865 | 1309 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 865 | 1309 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 865 | 1309 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794758 | 572 | 743 | 1313 | 0 |
| HO778003 | 729 | 377 | 1100 | 0 |
| HO651392 | 413 | 902 | 1314 | 0 |
| HO794758 | 107 | 588 | 691 | 0.028 |
| HO794758 | 107 | 419 | 520 | 0.045 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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