| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016838 |
| Family | CE8 |
| Protein Properties | Length: 351 Molecular Weight: 38710.2 Isoelectric Point: 9.229 |
| Chromosome | Chromosome/Scaffold: 08 Start: 20227773 End: 20229318 |
| Description | methylesterase PCR A |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 41 | 334 | 0 |
| DVVVAKDGTGQFTTVTEAVASAPENIKKRYVIYVKKGVYEEIVNIGKRKDNITIVGDGRDLTILTGSLSGNHTSHTATLGVDGNGFTAQDIGIQNTAGAE KGQAVALRISGDRSVVYRCRVEAFQDTLYAHSGRQFYRECYITGTVDFICGEAAAVFQQCQIEARKPMKGQSNMITAQSRSYKTQNSGFTIYKCNITATP DLTPVKGTVKTFLGRPWGPYSTVVVMKSFIDDLIDPAGWAPWDIKDKGRLSTLFYGEFQNYGPGANTTNRVKWKGYKSIKDPKEAATFTLKNLI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 351 Download |
| MIHGNFLCFS SLMVSILFWF LCSSVTQVRM TDPEALKVRA DVVVAKDGTG QFTTVTEAVA 60 SAPENIKKRY VIYVKKGVYE EIVNIGKRKD NITIVGDGRD LTILTGSLSG NHTSHTATLG 120 VDGNGFTAQD IGIQNTAGAE KGQAVALRIS GDRSVVYRCR VEAFQDTLYA HSGRQFYREC 180 YITGTVDFIC GEAAAVFQQC QIEARKPMKG QSNMITAQSR SYKTQNSGFT IYKCNITATP 240 DLTPVKGTVK TFLGRPWGPY STVVVMKSFI DDLIDPAGWA PWDIKDKGRL STLFYGEFQN 300 YGPGANTTNR VKWKGYKSIK DPKEAATFTL KNLIGVSWLR FRDVPYEDGL * 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02314 | PLN02314 | 8.0e-123 | 37 | 350 | 318 | + pectinesterase | ||
| PLN02468 | PLN02468 | 1.0e-126 | 36 | 350 | 319 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-158 | 38 | 350 | 317 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02488 | PLN02488 | 2.0e-158 | 32 | 350 | 323 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 5.0e-175 | 41 | 337 | 300 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28620.1 | 0 | 32 | 350 | 206 | 524 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_172624.1 | 0 | 31 | 350 | 236 | 557 | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_172625.3 | 0 | 32 | 350 | 206 | 524 | pectin methylesterase, putative [Arabidopsis thaliana] |
| RefSeq | NP_189437.1 | 0 | 40 | 350 | 187 | 497 | pectinesterase family protein [Arabidopsis thaliana] |
| Swiss-Prot | Q1JPL7 | 0 | 31 | 350 | 236 | 557 | PME18_ARATH RecName: Full=Pectinesterase/pectinesterase inhibitor 18; AltName: Full=AtPMEpcrA; Contains: RecName: Full=Pectinesterase inhibitor 18; AltName: Full=Pectin methylesterase inhibitor 18; Contains: RecName: Full=Bifunctional pectinesterase 18/rRNA N-glycosylase; Short=PE 18; AltName: Full=Ribosome-inactivating protein; AltName: Full=Pectin methylesterase 18; AltName: Full=Pectin methylesterase 4; Short=AtPME4; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 40 | 350 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 34 | 350 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 4e-24 | 52 | 335 | 18 | 335 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 4e-24 | 52 | 335 | 18 | 335 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 4e-24 | 52 | 335 | 18 | 335 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
