y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra016911 |
Family | GH28 |
Protein Properties | Length: 434 Molecular Weight: 46580.4 Isoelectric Point: 8.426 |
Chromosome | Chromosome/Scaffold: 04 Start: 17640459 End: 17642619 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 418 | 0 |
WKKACSSSGAVNLLVPEGKTYFLKSLRLNGPCKSVLTVQILGTLSASQQRSDYEDLSKWITFDGVNSLTVDGGATGTVNGNGETWWENSCKRNEAKKCTK APTALTFYNSKNLRVNNLRVKDAQQIQISIEKCSNVQVSNVEVTAPADSPNTDGIHITNTQNIQVSNSIIGTGDDCISIESGSQNVKINDLTCGPGHGIS IGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTEQKSAVQIKNVVYRNISGTSASDIAITF NCSKNYPCQGIVLDKVNIKGGKASCSNA |
Full Sequence |
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Protein Sequence Length: 434 Download |
MAHCCTVLTG LLVWSLFMLS WCEASRNNIN RYDHSYGTFK SNSLIKRRDD ITRLKSVARA 60 SLRLPTTVSV SDFGAKGDGK TDDTQAFVNA WKKACSSSGA VNLLVPEGKT YFLKSLRLNG 120 PCKSVLTVQI LGTLSASQQR SDYEDLSKWI TFDGVNSLTV DGGATGTVNG NGETWWENSC 180 KRNEAKKCTK APTALTFYNS KNLRVNNLRV KDAQQIQISI EKCSNVQVSN VEVTAPADSP 240 NTDGIHITNT QNIQVSNSII GTGDDCISIE SGSQNVKIND LTCGPGHGIS IGSLGDDNSK 300 AFVSGVTVDG AKLSGTDNGV RIKTYQGGSG TASNIIFQNI QMENVKNPII IDQDYCDKSK 360 CTEQKSAVQI KNVVYRNISG TSASDIAITF NCSKNYPCQG IVLDKVNIKG GKASCSNANV 420 MDKDGVLPQC KST* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 7.0e-91 | 68 | 409 | 347 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-106 | 66 | 420 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 7.0e-116 | 95 | 420 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-139 | 58 | 408 | 354 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 0 | 1 | 430 | 430 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC02763.1 | 0 | 1 | 433 | 1 | 426 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | AAL84942.1 | 0 | 1 | 433 | 1 | 433 | At2g41850/T11A7.5 [Arabidopsis thaliana] |
EMBL | CAC05657.1 | 0 | 1 | 433 | 1 | 434 | endopolygalacturonase [Brassica napus] |
RefSeq | NP_191310.1 | 0 | 1 | 430 | 1 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_850359.1 | 0 | 1 | 433 | 1 | 433 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-23 | 92 | 417 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-23 | 92 | 417 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-23 | 92 | 417 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-23 | 92 | 417 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-23 | 92 | 417 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |