| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra016912 |
| Family | GH28 |
| Protein Properties | Length: 449 Molecular Weight: 47847.3 Isoelectric Point: 8.9112 |
| Chromosome | Chromosome/Scaffold: 04 Start: 17637219 End: 17639806 |
| Description | polygalacturonase abscission zone A. thaliana |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 106 | 433 | 0 |
| WKKACSSSGAVNLLVPEGKTYFLKSLRLNGPCKSVLTVQILGTLSASQQRSDYEDLSKWITFDGVNSLTVDGGATGTVNGNGETWWENSCKRNEAKKCTK APTALTFYNSKNLRVNNLRVKDAQQIQISIEKCSNVQVSNVEVTAPADSPNTDGIHITNTQNIQVSNSIIGTGDDCISIESGSQNVKINDLTCGPGHGIS IGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTEQKSAVQIKNVVYRNISGTSASDIAITF NCSKNYPCQGIVLDKVNIKGGKASCSNA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 449 Download |
| MAERGGERGA ERGGDRGGFG RGFGGGRGDR GGRGETRETS RNNINRYDHS YGTFKSNSLI 60 KRRDDITRLK SVARASLRLP TTVSVSDFGA KGDGKTDDTQ AFVNAWKKAC SSSGAVNLLV 120 PEGKTYFLKS LRLNGPCKSV LTVQILGTLS ASQQRSDYED LSKWITFDGV NSLTVDGGAT 180 GTVNGNGETW WENSCKRNEA KKCTKAPTAL TFYNSKNLRV NNLRVKDAQQ IQISIEKCSN 240 VQVSNVEVTA PADSPNTDGI HITNTQNIQV SNSIIGTGDD CISIESGSQN VKINDLTCGP 300 GHGISIGSLG DDNSKAFVSG VTVDGAKLSG TDNGVRIKTY QGGSGTASNI IFQNIQMENV 360 KNPIIIDQDY CDKSKCTEQK SAVQIKNVVY RNISGTSASD IAITFNCSKN YPCQGIVLDK 420 VNIKGGKASC SNANVMDKDG VLPQCKST* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-90 | 83 | 424 | 347 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-105 | 81 | 435 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-114 | 110 | 435 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-139 | 73 | 423 | 354 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 0 | 40 | 445 | 406 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC02763.1 | 0 | 38 | 448 | 23 | 426 | putative polygalacturonase [Arabidopsis thaliana] |
| GenBank | AAL84942.1 | 0 | 38 | 448 | 23 | 433 | At2g41850/T11A7.5 [Arabidopsis thaliana] |
| EMBL | CAC05657.1 | 0 | 38 | 448 | 23 | 434 | endopolygalacturonase [Brassica napus] |
| RefSeq | NP_191310.1 | 0 | 47 | 445 | 32 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_850359.1 | 0 | 38 | 448 | 23 | 433 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-23 | 107 | 432 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-23 | 107 | 432 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-23 | 107 | 432 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-23 | 107 | 432 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-23 | 107 | 432 | 15 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX044047 | 219 | 224 | 442 | 0 |
| EW729503 | 214 | 232 | 445 | 0 |
| CD531316 | 209 | 93 | 301 | 0 |
| EE091344 | 247 | 182 | 427 | 0 |
| EE093402 | 255 | 160 | 413 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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