| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra017014 |
| Family | GH28 |
| Protein Properties | Length: 372 Molecular Weight: 40183.7 Isoelectric Point: 8.4795 |
| Chromosome | Chromosome/Scaffold: 04 Start: 17137356 End: 17139120 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 121 | 356 | 0 |
| MGFAFVNNSRINGITSLNSKMGHFDFFSVHQFNITGVTIKAPGDSPNTDGLKFGFCSNIHISDTHIGTGDDCIAILSGVTDMDISNVKCGPGHGISVGSL GKGKDDKDVNGLTVRDTVFNGTSDGIRIKTWESSISQIVVSHLVYENIQMINVGNPINIDQKYCPYPPCKKKGESHVQIQDLKLTNIYGTSKNKVAVKLK CSKSFPCKNVELVDINLENKGSKGPSTAVCENVHGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 372 Download |
| MAWIASAFKA LCLSFLFVSV ACRSTNGSKV FNVRRYGANP DGKTDNVNTF TSIWKSACAR 60 SGSSKIYVPN GTFYLGGAVV FEGPCINQIE FIIDGTLLAP SNPGDIKNKT WINFRFDYSN 120 MGFAFVNNSR INGITSLNSK MGHFDFFSVH QFNITGVTIK APGDSPNTDG LKFGFCSNIH 180 ISDTHIGTGD DCIAILSGVT DMDISNVKCG PGHGISVGSL GKGKDDKDVN GLTVRDTVFN 240 GTSDGIRIKT WESSISQIVV SHLVYENIQM INVGNPINID QKYCPYPPCK KKGESHVQIQ 300 DLKLTNIYGT SKNKVAVKLK CSKSFPCKNV ELVDINLENK GSKGPSTAVC ENVHGSAHGK 360 MVPEHCLNGP W* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 6.0e-62 | 29 | 368 | 377 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 3.0e-66 | 13 | 368 | 388 | + polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-66 | 29 | 368 | 363 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-68 | 58 | 357 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-91 | 26 | 366 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_175003.1 | 0 | 1 | 368 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 1 | 360 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175005.1 | 0 | 1 | 360 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179149.2 | 0 | 1 | 368 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_181560.1 | 0 | 1 | 368 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000008 | 134 | 332 | 167 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.00000000000007 | 128 | 310 | 114 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 0.0000000000002 | 167 | 357 | 152 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000002 | 167 | 357 | 152 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000002 | 167 | 357 | 152 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
