y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra017139 |
Family | AA1 |
Protein Properties | Length: 560 Molecular Weight: 61834.3 Isoelectric Point: 9.7503 |
Chromosome | Chromosome/Scaffold: 04 Start: 16368656 End: 16371645 |
Description | Laccase/Diphenol oxidase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 25 | 545 | 0 |
MVRHYKFNVVMKNITRLCSSKPTVTVNGRYPGPTIYAREDDTLLIKVVNHVKYNVSIHWHGVRQVRTGWADGPAYITQCPIQPGQVYTYNYTLTGQRGTL WWHAHILWLRATVYGAIVILPKRGVPYPFPKPDHEKVIVLGEWWKSDTENVINEALKSGLAPNVSDAHMINGRPGLAKNCPSDQGYKLSVKNGKTYLLRV VNAALNEELFFKVAGHLFTVVEVDAVYVKPFKIDTIVIAPGQTTNVLLTASKSTGKYLVTASPFMDSPIAVDNVTATATVHYSGTLSSSPTILTLPPPQN ATSVATNFTNSLRSLNSKKYPALVPTTIDHHLFFTVGLGLNPCPTCKAGNGSRVVASINNVTFVMPKIALLPAHYFNISGVFTPDFPKIPPHVFNYSGGS LTNMATETGTRLYKLPYNATVQLVLQDTGVIAPENHPIHLHGYNFFEVGRGLGNFNPKKDPNNFYLVDPVERNTIGVPSGGWVVIRFRADNPGVWFMHCH LEVHTTWGLKMAFLVENGKGP |
Full Sequence |
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Protein Sequence Length: 560 Download |
MKSHMVWFLF LASFLSVFPA PSESMVRHYK FNVVMKNITR LCSSKPTVTV NGRYPGPTIY 60 AREDDTLLIK VVNHVKYNVS IHWHGVRQVR TGWADGPAYI TQCPIQPGQV YTYNYTLTGQ 120 RGTLWWHAHI LWLRATVYGA IVILPKRGVP YPFPKPDHEK VIVLGEWWKS DTENVINEAL 180 KSGLAPNVSD AHMINGRPGL AKNCPSDQGY KLSVKNGKTY LLRVVNAALN EELFFKVAGH 240 LFTVVEVDAV YVKPFKIDTI VIAPGQTTNV LLTASKSTGK YLVTASPFMD SPIAVDNVTA 300 TATVHYSGTL SSSPTILTLP PPQNATSVAT NFTNSLRSLN SKKYPALVPT TIDHHLFFTV 360 GLGLNPCPTC KAGNGSRVVA SINNVTFVMP KIALLPAHYF NISGVFTPDF PKIPPHVFNY 420 SGGSLTNMAT ETGTRLYKLP YNATVQLVLQ DTGVIAPENH PIHLHGYNFF EVGRGLGNFN 480 PKKDPNNFYL VDPVERNTIG VPSGGWVVIR FRADNPGVWF MHCHLEVHTT WGLKMAFLVE 540 NGKGPNQSIL PPPKDFPKC* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07732 | Cu-oxidase_3 | 6.0e-51 | 32 | 148 | 119 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
PLN02191 | PLN02191 | 1.0e-61 | 6 | 549 | 586 | + L-ascorbate oxidase | ||
PLN02604 | PLN02604 | 8.0e-85 | 4 | 537 | 557 | + oxidoreductase | ||
TIGR03388 | ascorbase | 3.0e-86 | 26 | 537 | 545 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
TIGR03389 | laccase | 0 | 26 | 559 | 537 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC49536.1 | 0 | 1 | 559 | 1 | 557 | diphenol oxidase [Nicotiana tabacum] |
RefSeq | NP_565881.1 | 0 | 1 | 559 | 1 | 558 | IRX12 (IRREGULAR XYLEM 12); laccase [Arabidopsis thaliana] |
RefSeq | XP_002322961.1 | 0 | 8 | 559 | 6 | 557 | laccase 1a [Populus trichocarpa] |
RefSeq | XP_002322962.1 | 0 | 7 | 559 | 5 | 557 | laccase 1b [Populus trichocarpa] |
RefSeq | XP_002520425.1 | 0 | 7 | 559 | 6 | 556 | laccase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 24 | 537 | 1 | 521 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1asq_A | 0 | 24 | 537 | 1 | 521 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1asp_B | 0 | 24 | 537 | 1 | 521 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1asp_A | 0 | 24 | 537 | 1 | 521 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1aso_B | 0 | 24 | 537 | 1 | 521 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |