| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra017412 |
| Family | PL1 |
| Protein Properties | Length: 460 Molecular Weight: 51355.5 Isoelectric Point: 9.9988 |
| Chromosome | Chromosome/Scaffold: 09 Start: 15095402 End: 15097110 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 178 | 372 | 0 |
| RSMIIKLQQELIINSDKTIDGRGANIHITGGAGLTLQFVKNVIIHNIHIKTIVPGNGGMIRDSEHHFGHRTTSDGDGINIFGSTNVWIDHVSMTNCTDGM IDVIMGSTAITISNCHLTDHNEVMLFGAREEDVVDKKMQITVAFNHFGKRLVQRMPRARFGLVHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 460 Download |
| MAVAYLNLGS HVFAFLSLCL AVVAPSIQAH VAVFDEYWTQ RQAAALRQTI ESYDPNPFNV 60 TDHLNYHAAL AMETTGADNG TRRELGQVGG GRKTKRRGGR YHSLNAIDKC WRGHRNWHKN 120 RKKLADCVLG FGRKTTGGKK GPMYVVTDAS DDDLMNPKPG TLRYAVTRDR PLWIIFGRSM 180 IIKLQQELII NSDKTIDGRG ANIHITGGAG LTLQFVKNVI IHNIHIKTIV PGNGGMIRDS 240 EHHFGHRTTS DGDGINIFGS TNVWIDHVSM TNCTDGMIDV IMGSTAITIS NCHLTDHNEV 300 MLFGAREEDV VDKKMQITVA FNHFGKRLVQ RMPRARFGLV HVVNNDYTHW EMYAIGGNMN 360 PTIISQGNRF IAPPKENSKQ VTKREYAKYS EWKSWNWQSE RDYFLNGAYF VKSGRANAWS 420 PAPENPIPRH FAIQPQPGTG VRRLTKDAGT LGCRPGKSC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 3.0e-19 | 30 | 85 | 56 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 4.0e-28 | 187 | 449 | 284 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-65 | 185 | 370 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-79 | 180 | 374 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB69759.1 | 0 | 1 | 459 | 1 | 459 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAN79927.1 | 0 | 22 | 459 | 19 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 22 | 459 | 48 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_172894.1 | 0 | 1 | 459 | 1 | 459 | AT59; lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_178375.1 | 0 | 6 | 459 | 2 | 455 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 105 | 451 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 105 | 451 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-22 | 135 | 361 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 3e-17 | 183 | 370 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 8e-16 | 188 | 370 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
