| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra017609 |
| Family | CBM22 |
| Protein Properties | Length: 668 Molecular Weight: 74142.5 Isoelectric Point: 9.1849 |
| Chromosome | Chromosome/Scaffold: 03 Start: 29267973 End: 29271224 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 141 | 256 | 1.6e-21 |
| IIVNPDLQNGSQGWAQFANAKVDFREFGGNKFVVARGRNQSYDSVSQKISLEKGLLYTFSAWLQVSKGKAPVIAVFKKNGEYKHAGSVIAESKCWSMLKG GLTIDESGPAELYFES | |||
| GH10 | 315 | 575 | 0 |
| QNRLGFSFGCEVEKYILVNQAYQNWFTKRFTVTTFANEMKWYSTEAVRGKEDYTTADAMLRFFKQHGIAVRGHNIVWNDPKYQLSWVSSLSGNDLYNAVK RRVSSVVSRYKGQLLSWDVVNENLHFSFFESKMGPQASYNIFALAHSIDPRTTMFMNEFDTLEQPGDSASSPARYLGKLRELQSIRVAGNIQLGIGLESH FNIPNIPYMRSALDTLAATGLPIWLTEVDVQAPPNVQAKYFEQVLREGHAHPQVKGMVTWS | |||
| Full Sequence |
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| Protein Sequence Length: 668 Download |
| MIWVLSHRQR KETGRGVEAA KKSNDGGYIR RIWWFRRSDE RKREANGRNL HGGGSGGGLN 60 SGQRGAVTII ITRKGGAASR GGELGEGGGA EEIHPSGVHQ DSGLGASSTA ASLLQPFSIK 120 LFSILSLCLE NPYKPQYNGG IIVNPDLQNG SQGWAQFANA KVDFREFGGN KFVVARGRNQ 180 SYDSVSQKIS LEKGLLYTFS AWLQVSKGKA PVIAVFKKNG EYKHAGSVIA ESKCWSMLKG 240 GLTIDESGPA ELYFESEDTT VEIWVDSISL QPFTQEEWNA HHEQTIHRTR KRGMRIRAVN 300 SLGEPIPNAT ISIVQNRLGF SFGCEVEKYI LVNQAYQNWF TKRFTVTTFA NEMKWYSTEA 360 VRGKEDYTTA DAMLRFFKQH GIAVRGHNIV WNDPKYQLSW VSSLSGNDLY NAVKRRVSSV 420 VSRYKGQLLS WDVVNENLHF SFFESKMGPQ ASYNIFALAH SIDPRTTMFM NEFDTLEQPG 480 DSASSPARYL GKLRELQSIR VAGNIQLGIG LESHFNIPNI PYMRSALDTL AATGLPIWLT 540 EVDVQAPPNV QAKYFEQVLR EGHAHPQVKG MVTWSGYSPS GCYKMCLTDG NFRNLPTGDV 600 VDKLLREWGG LRGQTTGLTD ADGFFEASLL HGDYDISIAH PLTNSTASHR FKLTSDDSQP 660 SRFVVHV* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 4.0e-5 | 139 | 259 | 132 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 4.0e-30 | 296 | 558 | 276 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-45 | 320 | 574 | 274 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-76 | 353 | 601 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19865.1 | 0 | 127 | 667 | 1 | 544 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 122 | 667 | 120 | 669 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 493 | 600 | 2 | 109 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195110.3 | 0 | 128 | 667 | 33 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_195112.2 | 0 | 128 | 667 | 33 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 1e-26 | 322 | 601 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1tux_A | 7e-24 | 313 | 605 | 9 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 1e-23 | 313 | 607 | 9 | 303 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 1e-23 | 313 | 607 | 9 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 2e-23 | 313 | 607 | 9 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX266128 | 285 | 335 | 614 | 0 |
| DR353177 | 217 | 170 | 386 | 0 |
| GR454025 | 228 | 122 | 349 | 0 |
| ES938997 | 195 | 128 | 322 | 0 |
| EX266128 | 41 | 617 | 653 | 0.24 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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