| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra017610 |
| Family | GH10 |
| Protein Properties | Length: 459 Molecular Weight: 52645.2 Isoelectric Point: 6.6883 |
| Chromosome | Chromosome/Scaffold: 03 Start: 29272197 End: 29274557 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 99 | 359 | 0 |
| TKPFFLLGCAMNFRILQSEGYRKWFASRFAITSFTNEMKWYTTEKVRGQENYTAADSMLKFAEENDILVRGHTVLWDDPKMQPSWVENIKDPEDVRNVTL NRINSVMKRYKGKLTGWDVVNENLHWDYFEKMLGVNASSRFYNLAYKLDPDVTLFVNEYNTIENPGEVTATPVKVKDKMEEILAYQGNENIKGAIGAQGH FSPIQPNLAYMRSALDTLGSLGLPVWITELDMPKCPNQAKYIEEILREVYSHPAVEGIIIF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 459 Download |
| MKNFNNGFFP SMLFLLICLV YSGLANDPFS HSHSLKTESE DREAKISVTK LSLKQFSKKE 60 WKLKQDQLIE KIRKNKVRFE VTYNNKTAVK DAVISLKQTK PFFLLGCAMN FRILQSEGYR 120 KWFASRFAIT SFTNEMKWYT TEKVRGQENY TAADSMLKFA EENDILVRGH TVLWDDPKMQ 180 PSWVENIKDP EDVRNVTLNR INSVMKRYKG KLTGWDVVNE NLHWDYFEKM LGVNASSRFY 240 NLAYKLDPDV TLFVNEYNTI ENPGEVTATP VKVKDKMEEI LAYQGNENIK GAIGAQGHFS 300 PIQPNLAYMR SALDTLGSLG LPVWITELDM PKCPNQAKYI EEILREVYSH PAVEGIIIFA 360 GPEVSGFDKL TLADKDFNIT ETGDVIDKLL KEWHQKTSDI PNIFMVDHEN EEEDVSLLHG 420 LYNVNVSHPQ IKNFSTSLRL EVTKEMGPRQ VVRVVINA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 7.0e-34 | 101 | 330 | 238 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 6.0e-51 | 95 | 356 | 289 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-83 | 136 | 386 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19864.1 | 0 | 35 | 425 | 123 | 513 | putative protein [Arabidopsis thaliana] |
| EMBL | CAB80099.1 | 0 | 35 | 458 | 123 | 546 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195107.1 | 0 | 27 | 458 | 106 | 536 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_680761.1 | 0.0000002 | 1 | 72 | 1 | 78 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_680761.1 | 0 | 19 | 458 | 132 | 570 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ta3_B | 2e-27 | 100 | 335 | 14 | 246 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1i1x_A | 9e-26 | 125 | 330 | 38 | 240 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1i1w_A | 9e-26 | 125 | 330 | 38 | 240 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1tux_A | 1e-25 | 134 | 330 | 47 | 240 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 1e-25 | 125 | 330 | 38 | 240 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
