| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra017659 |
| Family | CBM43 |
| Protein Properties | Length: 555 Molecular Weight: 58581.5 Isoelectric Point: 5.96 |
| Chromosome | Chromosome/Scaffold: 03 Start: 29566054 End: 29568974 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 418 | 499 | 2.5e-33 |
| WCVSKKDATDEQLQSSIDWACGQGIDCGAIQPGGACFEPNNVASHAAFAMNMYYQKSPKRPTDCDFSQTATITSQNPSYNSC | |||
| GH17 | 289 | 392 | 1.5e-34 |
| RSQVDAVHSALKSMGFEKVEIVVAETGWASRGDPNEVGPSVDNAKAYNGNLIAHLRSMVGTPLMPGKSVDTYIFALYDENLKSGPSSERAFGLFKTDHSM AYDV | |||
| GH17 | 26 | 265 | 0 |
| IGVNYGQVADNLPPPSETAKLIQSTSIQKVRLYGADPAIIKALAGTGVGIVIGTANGDLPSLAADPNAASQWISSNVLPFYPASKIILITVGNEVLLSKD PNLVSQLLPAMQNVQKALEAVSLGGKIKVSTVHAMSVLGSSEPPSSGSFASGYQAGLKDILQFLSDTGSPFAINPYPFFAYQSDPRPETLAFCLFQPNAG RPDHNTGITYMNMFDAQVDAVHSALKSMGFEKVEIVVAET | |||
| Full Sequence |
|---|
| Protein Sequence Length: 555 Download |
| MAISICFSLL LIVLSQFPSS HAEPFIGVNY GQVADNLPPP SETAKLIQST SIQKVRLYGA 60 DPAIIKALAG TGVGIVIGTA NGDLPSLAAD PNAASQWISS NVLPFYPASK IILITVGNEV 120 LLSKDPNLVS QLLPAMQNVQ KALEAVSLGG KIKVSTVHAM SVLGSSEPPS SGSFASGYQA 180 GLKDILQFLS DTGSPFAINP YPFFAYQSDP RPETLAFCLF QPNAGRPDHN TGITYMNMFD 240 AQVDAVHSAL KSMGFEKVEI VVAETVLFMS YITCLSLLET HVTVSLIHRS QVDAVHSALK 300 SMGFEKVEIV VAETGWASRG DPNEVGPSVD NAKAYNGNLI AHLRSMVGTP LMPGKSVDTY 360 IFALYDENLK SGPSSERAFG LFKTDHSMAY DVGLAKSSGS STSNSSSQTP SGKASTGWCV 420 SKKDATDEQL QSSIDWACGQ GIDCGAIQPG GACFEPNNVA SHAAFAMNMY YQKSPKRPTD 480 CDFSQTATIT SQNPSYNSCV YPGGGGGAGS AGVMNKYVNS DKIESKKNGA VESKVYSSLS 540 FLLIVVSLIV HVNM* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 6.0e-5 | 306 | 385 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 8.0e-23 | 418 | 488 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 6.0e-41 | 418 | 501 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 5.0e-83 | 26 | 392 | 367 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD22313.1 | 0 | 20 | 495 | 19 | 443 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| GenBank | ABK95331.1 | 0 | 1 | 504 | 1 | 454 | unknown [Populus trichocarpa] |
| RefSeq | NP_179219.4 | 0 | 20 | 548 | 19 | 491 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195174.6 | 0 | 1 | 554 | 1 | 504 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002509479.1 | 0 | 20 | 504 | 22 | 458 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 26 | 392 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 26 | 392 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 26 | 392 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 26 | 395 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 26 | 395 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
