| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra017758 |
| Family | AA4 |
| Protein Properties | Length: 548 Molecular Weight: 60310.9 Isoelectric Point: 6.8356 |
| Chromosome | Chromosome/Scaffold: 03 Start: 30292536 End: 30295470 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA4 | 107 | 324 | 1.3e-21 |
| FNEILGGEKYVVQDEERLETANTDWMHKYRGSSKLMLLPKNTEEVSQILKYCDSRSLAVVPQGGNTGLVGGSVPVFDEVIINVGLMNKVLSFDEVSGVLV CEAGCILENLATFLDTKGFVMPLDLGAKGSCHIGGNVSTNAGGLRLIRYGSLHGTVLGLEAVTANGNVLDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTK VSILTQPKMSSVNLAFIA | |||
| Full Sequence |
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| Protein Sequence Length: 548 Download |
| MMMIRRWRRS GDFLRSACKS LTSLRQKHNS MSPSVSGFVN RYESKGKTFE SNAWNDHNRE 60 LDHHSCVGGN LWMMQQYKSF GSSSSSASKL QRNPLFSSLE PRDVSFFNEI LGGEKYVVQD 120 EERLETANTD WMHKYRGSSK LMLLPKNTEE VSQILKYCDS RSLAVVPQGG NTGLVGGSVP 180 VFDEVIINVG LMNKVLSFDE VSGVLVCEAG CILENLATFL DTKGFVMPLD LGAKGSCHIG 240 GNVSTNAGGL RLIRYGSLHG TVLGLEAVTA NGNVLDMLGT LRKDNTGYDL KHLFIGSEGS 300 LGIVTKVSIL TQPKMSSVNL AFIACKDFLS CQKLLVEAKR NLGEILSAFE FLDNNSMDLV 360 LNHLDGVRNP VSSSGNFYIL IETTGSGETY DREKLEAFLL KSLEQGLVSD GVIAQDINQA 420 SSFWRIREGI TEALQKAGAF YKYDLSLPVE EIYNIVNDLR GRLGDLANVM GYGHLGDGLI 480 EPYVYEWTSK HRGSISAEHG LGVMKANEIF YSKSPETVAL MVSIKKLLDP KGILNPYKVL 540 PHSFFSP* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02805 | PLN02805 | 4.0e-35 | 120 | 541 | 457 | + D-lactate dehydrogenase [cytochrome] | ||
| PRK11230 | PRK11230 | 3.0e-39 | 117 | 541 | 476 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 1.0e-54 | 314 | 539 | 251 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 2.0e-72 | 143 | 538 | 430 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 4.0e-99 | 113 | 542 | 458 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB16815.1 | 0 | 37 | 546 | 4 | 523 | actin interacting protein [Arabidopsis thaliana] |
| RefSeq | NP_568003.2 | 0 | 2 | 546 | 1 | 558 | FAD linked oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002268002.1 | 0 | 85 | 546 | 72 | 550 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310828.1 | 0 | 75 | 546 | 46 | 528 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521506.1 | 0 | 76 | 546 | 80 | 564 | d-lactate dehydrognease 2, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 0 | 98 | 540 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 0 | 98 | 540 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 0 | 98 | 540 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 0 | 98 | 540 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 0 | 98 | 540 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO838775 | 348 | 145 | 491 | 0 |
| FD574668 | 267 | 71 | 337 | 0 |
| GO839525 | 343 | 134 | 470 | 0 |
| CO071824 | 285 | 127 | 410 | 0 |
| CO071363 | 284 | 127 | 409 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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