| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018000 |
| Family | CE8 |
| Protein Properties | Length: 501 Molecular Weight: 55003.2 Isoelectric Point: 8.9019 |
| Chromosome | Chromosome/Scaffold: 06 Start: 9411876 End: 9415083 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 186 | 482 | 0 |
| DIIVSKDGNGTCKTISEAIKKAPQHSTRRTIIYVKAGRYEEKNLKVGRKKINLMFVGDGKGKTVISGGKSIFDNITTFHTASFAATGAGFIARDITFQNW AGPEKHQAVALRVGADHAVIYRCSIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMALQKNTITAQNRKDPNQNTGISIHASRV LATPDLQATNGTTQTYLGRPWKLYSRTVYMLSYIGNHVHTRGWLEWNTTFALDTLYYGEYLNTGPGSNISQRVNWPGYRVINSTAEANRFTVSEFIY | |||
| Full Sequence |
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| Protein Sequence Length: 501 Download |
| MDFPGSLAAS SPKDLIHVTV NMTLHHFSQA LYSSSSFSFL DMPPRVRSAY ESCVELLDDS 60 VDALTRALSS VVSVSGGQTK PQDVMTWLSS ALTNHDTCTE GFDGVGDGGV KDQMTDALKN 120 LSELVSNCLA IFAASGGGDD FAGVPIQNRR LLEVGGGGDR NMKFPRWTKR RERELLEMPV 180 SQIQADIIVS KDGNGTCKTI SEAIKKAPQH STRRTIIYVK AGRYEEKNLK VGRKKINLMF 240 VGDGKGKTVI SGGKSIFDNI TTFHTASFAA TGAGFIARDI TFQNWAGPEK HQAVALRVGA 300 DHAVIYRCSI IGYQDTLYVH SNRQFFRECD IYGTVDFIFG NAAVVLQNCS IYARKPMALQ 360 KNTITAQNRK DPNQNTGISI HASRVLATPD LQATNGTTQT YLGRPWKLYS RTVYMLSYIG 420 NHVHTRGWLE WNTTFALDTL YYGEYLNTGP GSNISQRVNW PGYRVINSTA EANRFTVSEF 480 IYGSSWLPST GVSFLAGLNL * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02506 | PLN02506 | 5.0e-166 | 11 | 498 | 491 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 2.0e-169 | 45 | 498 | 469 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-177 | 14 | 498 | 490 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 0 | 1 | 500 | 500 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 186 | 484 | 299 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_190491.1 | 0 | 1 | 500 | 105 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_200149.1 | 0 | 1 | 499 | 93 | 586 | PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002278061.1 | 0 | 1 | 500 | 94 | 597 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
| RefSeq | XP_002317777.1 | 0 | 1 | 498 | 55 | 550 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002321999.1 | 0 | 1 | 500 | 105 | 605 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 181 | 498 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 183 | 498 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 4e-19 | 190 | 489 | 12 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 4e-19 | 190 | 489 | 12 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 4e-19 | 190 | 489 | 12 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK470593 | 277 | 211 | 487 | 0 |
| EG509637 | 292 | 197 | 488 | 0 |
| CX190915 | 258 | 244 | 501 | 0 |
| EV076571 | 241 | 244 | 484 | 0 |
| DR946944 | 292 | 211 | 501 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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