| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018004 |
| Family | GH28 |
| Protein Properties | Length: 438 Molecular Weight: 47709.9 Isoelectric Point: 8.0299 |
| Chromosome | Chromosome/Scaffold: 06 Start: 9446169 End: 9448052 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 55 | 396 | 0 |
| DGGVQLIVPPGNWLTGSFNLTSHFTLFIQQGATILASQVESEYPMIPRLPSYGDARFASLIYGTNLTDVVITGNKGTINGQGKSWWLKYRSGGFNLISRP LLIEILYSENIQISDINLVDSPMWNIHPVYCKNVIIKNIKIDAPIDSPNTDGINPDSCTNTLIEDCSVTSGDDCIAVKSGIDQYGIATAIPTQQLSIRRL TCVSPDSAGIAIGSEMSGGIKDVRIEDVTLINTQSAIRIKTAIGRGGYVKDIFARRFTMKNMKYVFWMTGSYKLHPIGFDPNALPEIRNINYRDMTADNV TISAKLEGIKKDPFTGICMSNVTMDLSPTTKKLQWNCTDVAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 438 Download |
| MESSVESKKG IEYMAMQCRK HKAVLTDFGA VGDGKTSNTK AFRDAISKLT PQAADGGVQL 60 IVPPGNWLTG SFNLTSHFTL FIQQGATILA SQVESEYPMI PRLPSYGDAR FASLIYGTNL 120 TDVVITGNKG TINGQGKSWW LKYRSGGFNL ISRPLLIEIL YSENIQISDI NLVDSPMWNI 180 HPVYCKNVII KNIKIDAPID SPNTDGINPD SCTNTLIEDC SVTSGDDCIA VKSGIDQYGI 240 ATAIPTQQLS IRRLTCVSPD SAGIAIGSEM SGGIKDVRIE DVTLINTQSA IRIKTAIGRG 300 GYVKDIFARR FTMKNMKYVF WMTGSYKLHP IGFDPNALPE IRNINYRDMT ADNVTISAKL 360 EGIKKDPFTG ICMSNVTMDL SPTTKKLQWN CTDVAGVTSR VKPEPCSLLP SKGPAMDCHF 420 PTDKIPIESV VLNKCTA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-26 | 24 | 406 | 405 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-31 | 25 | 378 | 364 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 9.0e-32 | 25 | 317 | 306 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-35 | 58 | 394 | 345 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-61 | 23 | 383 | 400 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC63679.1 | 0 | 6 | 437 | 28 | 466 | putative polygalacturonase [Arabidopsis thaliana] |
| GenBank | ABK28510.1 | 0 | 6 | 437 | 39 | 477 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_179968.2 | 0 | 6 | 437 | 39 | 477 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_190464.1 | 0 | 2 | 435 | 26 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002513653.1 | 0 | 11 | 437 | 41 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 25 | 389 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 25 | 389 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 25 | 389 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 25 | 389 | 30 | 421 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.000000000000003 | 25 | 356 | 159 | 529 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR459424 | 276 | 163 | 438 | 0 |
| EG500458 | 279 | 23 | 295 | 0 |
| GR454775 | 215 | 1 | 215 | 0 |
| DY294251 | 422 | 13 | 412 | 0 |
| GR462923 | 211 | 228 | 438 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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