| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018023 |
| Family | GH28 |
| Protein Properties | Length: 470 Molecular Weight: 51365.9 Isoelectric Point: 8.039 |
| Chromosome | Chromosome/Scaffold: 06 Start: 9560913 End: 9562945 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 425 | 0 |
| SDGGAQLLVPPGKWLTGSFNLTSHFTLFIQKGATILASQDESEWPVVPPLPSYGKGRDGTGTGRFNSLISGTNLTDVVITGNNGTINGQGQYWWDKFKKK QFNLTRPYMIELLFSQNIQISNITLVDSPSWHIHPVYCNNVIVKSITIIAPVDVPNTDGINPDSCTNTLIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTQ QLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLINTESSVRIKTAAGRGAYVKDIYARRFTMKTMKYVFWMSGNYNQHPDEGYDPKALPEVSNINF SDMTAENVTMSASLAGIDKDPFTGICISNVNITLSAKPKEVQWNCTDVAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 470 Download |
| MIRLVFGILV LFAIFRFPTI ESRSHHPSAY SGIEFPALNC RKHKAVITDF GGVGDGKTSN 60 TKAFRTALSK LSDLASDGGA QLLVPPGKWL TGSFNLTSHF TLFIQKGATI LASQDESEWP 120 VVPPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFNLT 180 RPYMIELLFS QNIQISNITL VDSPSWHIHP VYCNNVIVKS ITIIAPVDVP NTDGINPDSC 240 TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG 300 GIKDVRIEDV TLINTESSVR IKTAAGRGAY VKDIYARRFT MKTMKYVFWM SGNYNQHPDE 360 GYDPKALPEV SNINFSDMTA ENVTMSASLA GIDKDPFTGI CISNVNITLS AKPKEVQWNC 420 TDVAGVTSRV KPEPCSLLPE KKTEGKNMDC MFPSDLIPIE SVVLKKCSL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 8.0e-20 | 1 | 435 | 463 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-25 | 168 | 423 | 262 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-26 | 47 | 407 | 378 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-26 | 47 | 432 | 412 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 1.0e-54 | 45 | 413 | 398 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC63679.1 | 0 | 1 | 468 | 1 | 465 | putative polygalacturonase [Arabidopsis thaliana] |
| GenBank | ABE66001.1 | 0 | 1 | 469 | 1 | 416 | glycoside hydrolase family 28 protein/polygalacturonase family protein [Arabidopsis thaliana] |
| GenBank | ABK28510.1 | 0 | 1 | 468 | 12 | 476 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_179968.2 | 0 | 1 | 468 | 12 | 476 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_190464.1 | 0 | 1 | 469 | 1 | 469 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.4013e-45 | 47 | 404 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.4013e-45 | 47 | 404 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.4013e-45 | 47 | 404 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.4013e-45 | 47 | 404 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-18 | 89 | 381 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
