| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018152 |
| Family | CE8 |
| Protein Properties | Length: 595 Molecular Weight: 65385.1 Isoelectric Point: 10.395 |
| Chromosome | Chromosome/Scaffold: 06 Start: 10652934 End: 10655151 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 281 | 578 | 0 |
| LVVSQDRSGHFRSIQSAINFAGRRRIKSRFIIYVKKGVYRENIEVGNDNHNIMLVGDGARKTIITSGRSVKNGYTTYNSATAGFGGQRFVAKDMTFINTA GPLRGQAVSVRSSSDLSVFYRVGIHGFQDTLYIHSQRQFFRECYISGTIDFIFGNAAVVFQNCMILVRRPLRGQANVITAQGRGDPFQNTGITIHSSRII AASDLRPVIGAYKTYLGRPWQAYSRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAITSAAVASRFTVGSLIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 595 Download |
| MLRGNGIFHI CLLASFLLLP FSSAVHDGDF SGGANAPSSW DHNIAPSQET APSPTPTTSP 60 PTTSPPSPGP AAAPSPINND SISGDMTWWC NKTPHAETCN YYFQRSPHNN INRPPRFRSE 120 FLRLLVQVAL DQAVITHAQT VKFGPSCTNN QRKAAWSDCV KLFENTVAQL NLTLKGLNPA 180 ASSDVKCSNF DAQTWLSTAQ TNIETCRSGS EDLKVSDFVM PAISNKNLSD LIGNCLAVNG 240 VLMKQHNHTT ANHKEYFPSW VSRHERRLLV SASLAKSRPH LVVSQDRSGH FRSIQSAINF 300 AGRRRIKSRF IIYVKKGVYR ENIEVGNDNH NIMLVGDGAR KTIITSGRSV KNGYTTYNSA 360 TAGFGGQRFV AKDMTFINTA GPLRGQAVSV RSSSDLSVFY RVGIHGFQDT LYIHSQRQFF 420 RECYISGTID FIFGNAAVVF QNCMILVRRP LRGQANVITA QGRGDPFQNT GITIHSSRII 480 AASDLRPVIG AYKTYLGRPW QAYSRVTIMK TYIDNSISPL GWSPWLRGSN FALNTVFYGE 540 YKNFGPGSST RWRVRWKGFH AITSAAVASR FTVGSLIAGG SWLPSTGVPF KTGL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 1.0e-143 | 78 | 594 | 530 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 8.0e-147 | 153 | 594 | 459 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 1.0e-151 | 148 | 594 | 451 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 4.0e-160 | 280 | 579 | 300 | + Pectinesterase. | ||
| PLN02995 | PLN02995 | 0 | 80 | 594 | 518 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_190324.1 | 0 | 1 | 594 | 1 | 594 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199962.1 | 0 | 87 | 594 | 35 | 536 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002264861.1 | 0 | 84 | 594 | 28 | 523 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
| RefSeq | XP_002322402.1 | 0 | 79 | 594 | 23 | 524 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002510939.1 | 0 | 85 | 594 | 30 | 526 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 279 | 594 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 282 | 594 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 3e-20 | 310 | 585 | 35 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 3e-20 | 310 | 585 | 35 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 3e-20 | 310 | 585 | 35 | 340 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
