| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018171 |
| Family | GH3 |
| Protein Properties | Length: 679 Molecular Weight: 75052.5 Isoelectric Point: 5.4823 |
| Chromosome | Chromosome/Scaffold: 06 Start: 10780577 End: 10785097 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 91 | 324 | 0 |
| LETRLAIPIIYGLDAVHGNNKFYGTTIFSHNIGLGATRDYDLARIIGSATALEVRASGAHWVFAPCVAVCKDPRWGRCLESYSEDTDVVCNMTSIVSGLQ GPPPEGHPAGFPFLAGRNNVVACAKHFVGDGGTEMGKNEGDTIASYEDLERIHMAPYLNCLAVSAVMPSYSRWNGRKLHGDRFLMTEILKDKFGFKGCLV SDWSGIEKMGEPRGSNYRECVEAAINTGIDMVMV | |||
| Full Sequence |
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| Protein Sequence Length: 679 Download |
| MTDAGEVTAM DCVYKNPNEG VEDRIQDLLQ RMTVEEKIGQ MTQIHRAVSS AAIIKDFFIG 60 SVCNSAGKSG NKDALSEDWA EMIDGFQTAA LETRLAIPII YGLDAVHGNN KFYGTTIFSH 120 NIGLGATRDY DLARIIGSAT ALEVRASGAH WVFAPCVAVC KDPRWGRCLE SYSEDTDVVC 180 NMTSIVSGLQ GPPPEGHPAG FPFLAGRNNV VACAKHFVGD GGTEMGKNEG DTIASYEDLE 240 RIHMAPYLNC LAVSAVMPSY SRWNGRKLHG DRFLMTEILK DKFGFKGCLV SDWSGIEKMG 300 EPRGSNYREC VEAAINTGID MVMVPYRYEK FINELTSLVK DGKILMSRID DAVERILRLK 360 FTAGLFEHPF SDISLLKFVG CKCRHNCLGC RQSNRRSRNK SGLREDSFGG DFSNEDFSYA 420 IVAVGEAPYA ESRGDDPEPS IHFDGDSIVR LVAEKIPTVA ILMTGRPLVL DMTMLEKVEA 480 LVAAWLPGTE GDGIADSVFG DYDFTGKLPM SWFRETEQLP MNPEADSYDP LFPLGFGLKS 540 TKREVQVCHR RGDPPRERTA PSRRETETRI PPRETPTASS SSEDHETEAE SSRFRENEAK 600 SSRFRDRNGE SSRFHEVSQS RRGFTRSHGV FEVSIKHGVA EGEKERSGVL EGEKRRLLVS 660 EIDASNETCP RRSVSSSA* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK15098 | PRK15098 | 1.0e-14 | 421 | 541 | 147 | + beta-D-glucoside glucohydrolase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-25 | 419 | 538 | 130 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PRK15098 | PRK15098 | 2.0e-49 | 25 | 373 | 363 | + beta-D-glucoside glucohydrolase; Provisional | ||
| COG1472 | BglX | 4.0e-65 | 32 | 374 | 354 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 3.0e-79 | 33 | 359 | 334 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY25449.1 | 0 | 32 | 540 | 1 | 578 | At3g47010 [Arabidopsis thaliana] |
| RefSeq | NP_190284.1 | 0 | 12 | 382 | 8 | 380 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190284.1 | 0 | 413 | 540 | 478 | 605 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190285.3 | 0 | 13 | 540 | 10 | 606 | hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_190288.1 | 0 | 12 | 397 | 8 | 418 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x39_A | 0 | 12 | 397 | 3 | 388 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1x39_A | 8e-32 | 417 | 540 | 477 | 599 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1x38_A | 0 | 12 | 397 | 3 | 388 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1x38_A | 8e-32 | 417 | 540 | 477 | 599 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1lq2_A | 0 | 12 | 397 | 3 | 388 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EL455042 | 312 | 67 | 376 | 0 |
| ES989614 | 205 | 1 | 205 | 0 |
| EX132989 | 299 | 60 | 356 | 0 |
| FC911602 | 284 | 10 | 291 | 0 |
| CX546685 | 284 | 10 | 291 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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