PlantCAZyme

CAZyme Information

Basic Information
Species	Brassica rapa
Cazyme ID	Bra018171
Family	GH3
Protein Properties	Length: 679 Molecular Weight: 75052.5 Isoelectric Point: 5.4823
Chromosome	Chromosome/Scaffold: 06 Start: 10780577 End: 10785097
Description	Glycosyl hydrolase family protein
View CDS

External Links
NCBI Taxonomy
CAZyDB

External Links

NCBI Taxonomy

CAZyDB

Signature Domain Download full data set without filtering

Family	Start	End	Evalue
GH3	91	324	0
LETRLAIPIIYGLDAVHGNNKFYGTTIFSHNIGLGATRDYDLARIIGSATALEVRASGAHWVFAPCVAVCKDPRWGRCLESYSEDTDVVCNMTSIVSGLQ GPPPEGHPAGFPFLAGRNNVVACAKHFVGDGGTEMGKNEGDTIASYEDLERIHMAPYLNCLAVSAVMPSYSRWNGRKLHGDRFLMTEILKDKFGFKGCLV SDWSGIEKMGEPRGSNYRECVEAAINTGIDMVMV

Full Sequence
Protein Sequence Length: 679 Download
MTDAGEVTAM DCVYKNPNEG VEDRIQDLLQ RMTVEEKIGQ MTQIHRAVSS AAIIKDFFIG 60 SVCNSAGKSG NKDALSEDWA EMIDGFQTAA LETRLAIPII YGLDAVHGNN KFYGTTIFSH 120 NIGLGATRDY DLARIIGSAT ALEVRASGAH WVFAPCVAVC KDPRWGRCLE SYSEDTDVVC 180 NMTSIVSGLQ GPPPEGHPAG FPFLAGRNNV VACAKHFVGD GGTEMGKNEG DTIASYEDLE 240 RIHMAPYLNC LAVSAVMPSY SRWNGRKLHG DRFLMTEILK DKFGFKGCLV SDWSGIEKMG 300 EPRGSNYREC VEAAINTGID MVMVPYRYEK FINELTSLVK DGKILMSRID DAVERILRLK 360 FTAGLFEHPF SDISLLKFVG CKCRHNCLGC RQSNRRSRNK SGLREDSFGG DFSNEDFSYA 420 IVAVGEAPYA ESRGDDPEPS IHFDGDSIVR LVAEKIPTVA ILMTGRPLVL DMTMLEKVEA 480 LVAAWLPGTE GDGIADSVFG DYDFTGKLPM SWFRETEQLP MNPEADSYDP LFPLGFGLKS 540 TKREVQVCHR RGDPPRERTA PSRRETETRI PPRETPTASS SSEDHETEAE SSRFRENEAK 600 SSRFRDRNGE SSRFHEVSQS RRGFTRSHGV FEVSIKHGVA EGEKERSGVL EGEKRRLLVS 660 EIDASNETCP RRSVSSSA*

Full Sequence

Protein Sequence Length: 679 Download

MTDAGEVTAM DCVYKNPNEG VEDRIQDLLQ RMTVEEKIGQ MTQIHRAVSS AAIIKDFFIG    60
SVCNSAGKSG NKDALSEDWA EMIDGFQTAA LETRLAIPII YGLDAVHGNN KFYGTTIFSH    120
NIGLGATRDY DLARIIGSAT ALEVRASGAH WVFAPCVAVC KDPRWGRCLE SYSEDTDVVC    180
NMTSIVSGLQ GPPPEGHPAG FPFLAGRNNV VACAKHFVGD GGTEMGKNEG DTIASYEDLE    240
RIHMAPYLNC LAVSAVMPSY SRWNGRKLHG DRFLMTEILK DKFGFKGCLV SDWSGIEKMG    300
EPRGSNYREC VEAAINTGID MVMVPYRYEK FINELTSLVK DGKILMSRID DAVERILRLK    360
FTAGLFEHPF SDISLLKFVG CKCRHNCLGC RQSNRRSRNK SGLREDSFGG DFSNEDFSYA    420
IVAVGEAPYA ESRGDDPEPS IHFDGDSIVR LVAEKIPTVA ILMTGRPLVL DMTMLEKVEA    480
LVAAWLPGTE GDGIADSVFG DYDFTGKLPM SWFRETEQLP MNPEADSYDP LFPLGFGLKS    540
TKREVQVCHR RGDPPRERTA PSRRETETRI PPRETPTASS SSEDHETEAE SSRFRENEAK    600
SSRFRDRNGE SSRFHEVSQS RRGFTRSHGV FEVSIKHGVA EGEKERSGVL EGEKRRLLVS    660
EIDASNETCP RRSVSSSA* 

Functional Domains Download unfiltered results here

Cdd ID	Domain	E-Value	Start	End	Length	Domain Description
PRK15098	PRK15098	1.0e-14	421	541	147	+ beta-D-glucoside glucohydrolase; Provisional
pfam01915	Glyco_hydro_3_C	1.0e-25	419	538	130	+ Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933.
PRK15098	PRK15098	2.0e-49	25	373	363	+ beta-D-glucoside glucohydrolase; Provisional
COG1472	BglX	4.0e-65	32	374	354	+ Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
pfam00933	Glyco_hydro_3	3.0e-79	33	359	334	+ Glycosyl hydrolase family 3 N terminal domain.

Gene Ontology
GO Term	Description
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975	carbohydrate metabolic process

Annotations - NR Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
GenBank	AAY25449.1	0	32	540	1	578	At3g47010 [Arabidopsis thaliana]
RefSeq	NP_190284.1	0	12	382	8	380	glycosyl hydrolase family 3 protein [Arabidopsis thaliana]
RefSeq	NP_190284.1	0	413	540	478	605	glycosyl hydrolase family 3 protein [Arabidopsis thaliana]
RefSeq	NP_190285.3	0	13	540	10	606	hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana]
RefSeq	NP_190288.1	0	12	397	8	418	glycosyl hydrolase family 3 protein [Arabidopsis thaliana]

Annotations - PDB Download unfiltered results here
Source	Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
PDB	1x39_A	0	12	397	3	388	B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein
PDB	1x39_A	8e-32	417	540	477	599	B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein
PDB	1x38_A	0	12	397	3	388	B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein
PDB	1x38_A	8e-32	417	540	477	599	B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein
PDB	1lq2_A	0	12	397	3	388	A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole

Metabolic Pathways
Pathway Name	Reaction	EC	Protein Name
coumarin biosynthesis (via 2-coumarate)	RXN-8036	EC-3.2.1.21	β-glucosidase
linamarin degradation	RXN-5341	EC-3.2.1.21	β-glucosidase
linustatin bioactivation	RXN-13602	EC-3.2.1.21	β-glucosidase
linustatin bioactivation	RXN-5341	EC-3.2.1.21	β-glucosidase
lotaustralin degradation	RXN-9674	EC-3.2.1.21	β-glucosidase
neolinustatin bioactivation	RXN-13603	EC-3.2.1.21	β-glucosidase
neolinustatin bioactivation	RXN-9674	EC-3.2.1.21	β-glucosidase
taxiphyllin bioactivation	RXN-13600	EC-3.2.1.21	β-glucosidase

Metabolic Pathways

Pathway Name

Reaction

Protein Name

coumarin biosynthesis (via 2-coumarate)

RXN-8036

EC-3.2.1.21

β-glucosidase

linamarin degradation

RXN-5341

EC-3.2.1.21

β-glucosidase

linustatin bioactivation

RXN-13602

EC-3.2.1.21

β-glucosidase

linustatin bioactivation

RXN-5341

EC-3.2.1.21

β-glucosidase

lotaustralin degradation

RXN-9674

EC-3.2.1.21

β-glucosidase

neolinustatin bioactivation

RXN-13603

EC-3.2.1.21

β-glucosidase

neolinustatin bioactivation

RXN-9674

EC-3.2.1.21

β-glucosidase

taxiphyllin bioactivation

RXN-13600

EC-3.2.1.21

β-glucosidase

Hydropathy

EST Download unfiltered results here

Hit

Length

Start

End

EValue

EL455042

312

376

ES989614

205

EX132989

299

356

FC911602

284

291

CX546685

284

291

Orthologous Group
Species	ID
Aquilegia coerulea	Aquca_009_00600.1	Aquca_009_00598.3	Aquca_009_00598.2	Aquca_009_00598.1	Aquca_009_00603.1
	Aquca_009_00596.1	Aquca_009_00601.1	Aquca_009_00602.1	Aquca_009_00735.2	Aquca_009_00735.1
	Aquca_009_00596.4	Aquca_009_00596.3	Aquca_009_00596.2	Aquca_009_00596.5	Aquca_009_00735.3
	Aquca_009_00601.2
Arabidopsis lyrata	485082	489005	487274	489003	485079
	323329	486769	485080
Arabidopsis thaliana	AT5G20950.2	AT5G20950.1	AT5G04885.1	AT5G20940.1	AT3G47000.1
	AT3G47010.2	AT3G47010.1	AT3G47050.2	AT3G47050.1	AT3G62710.1
	AT3G47040.1	AT3G47040.2
Brachypodium distachyon	Bradi1g08550.2	Bradi1g08570.2	Bradi1g08570.1	Bradi2g51280.1	Bradi1g08560.1
	Bradi1g08580.1	Bradi2g23720.1
Brassica rapa	Bra005825	Bra020139	Bra009417	Bra003508	Bra018177
	Bra014397	Bra002346	Bra018172	Bra006587	Bra033795
Carica papaya	evm.model.supercontig_103.89	evm.model.supercontig_51.147	evm.model.supercontig_103.88	evm.model.supercontig_51.146	evm.model.supercontig_103.83
	evm.model.supercontig_112.57	evm.model.supercontig_103.85
Capsella rubella	Carubv10016857m	Carubv10000466m	Carubv10000396m	Carubv10002603m	Carubv10016864m
	Carubv10019506m	Carubv10016871m	Carubv10018993m
Citrus clementina	Ciclev10019305m	Ciclev10030270m	Ciclev10018271m	Ciclev10017853m	Ciclev10015118m
	Ciclev10014767m	Ciclev10014537m	Ciclev10028019m	Ciclev10028018m	Ciclev10028048m
Citrus sinensis	orange1.1g038523m	orange1.1g036635m	orange1.1g006872m	orange1.1g013915m	orange1.1g013894m
	orange1.1g013886m	orange1.1g040637m
Cucumis sativus	Cucsa.340290.1	Cucsa.282900.1	Cucsa.111760.1	Cucsa.340300.1	Cucsa.356980.1
	Cucsa.146890.1	Cucsa.146880.2	Cucsa.146880.1	Cucsa.146890.3	Cucsa.146890.2
	Cucsa.340290.2	Cucsa.109190.1
Eucalyptus grandis	Eucgr.J00606.1	Eucgr.J00608.1	Eucgr.A02118.1	Eucgr.J00609.1	Eucgr.G02657.1
	Eucgr.J00604.1	Eucgr.J00603.1	Eucgr.J00605.1	Eucgr.B02287.1	Eucgr.B02276.1
	Eucgr.A02116.1	Eucgr.J00607.1
Fragaria vesca	mrna03614.1-v1.0-hybrid	mrna07689.1-v1.0-hybrid	mrna07690.1-v1.0-hybrid	mrna07985.1-v1.0-hybrid	mrna22463.1-v1.0-hybrid
	mrna00353.1-v1.0-hybrid	mrna22192.1-v1.0-hybrid
Glycine max	Glyma19g29050.1	Glyma10g15980.1	Glyma17g24410.1	Glyma15g13620.1	Glyma09g02731.2
	Glyma09g02731.1	Glyma02g43990.2	Glyma02g43990.1	Glyma14g04940.2	Glyma14g04940.1
	Glyma02g33550.1	Glyma16g04330.1	Glyma19g29060.1	Glyma16g04340.1	Glyma02g39010.1
	Glyma11g22940.2	Glyma11g22940.1	Glyma02g43990.3	Glyma14g37070.1	Glyma18g07260.2
Gossypium raimondii	Gorai.009G081100.1	Gorai.006G118100.3	Gorai.006G118100.2	Gorai.006G118100.1	Gorai.009G301800.2
	Gorai.009G301800.1	Gorai.013G114800.5	Gorai.013G114800.4	Gorai.013G114800.3	Gorai.013G114800.2
	Gorai.013G114800.11	Gorai.013G114800.10	Gorai.013G114800.1	Gorai.007G260100.2	Gorai.007G260100.1
	Gorai.007G260000.1	Gorai.013G260700.3	Gorai.013G260700.2	Gorai.013G260700.1	Gorai.002G219500.1
	Gorai.009G093600.1	Gorai.013G114800.6	Gorai.013G114800.8	Gorai.013G114800.7	Gorai.013G260700.4
	Gorai.013G114800.9	Gorai.013G114800.12	Gorai.001G127700.1	Gorai.001G127600.1
Linum usitatissimum	Lus10001151	Lus10013646	Lus10010656	Lus10033393	Lus10005706
	Lus10010657	Lus10005871	Lus10001200.86.321	Lus10013390	Lus10022413
	Lus10018102	Lus10008432	Lus10023604	Lus10013388	Lus10008434
	Lus10043457	Lus10034848	Lus10013647
Malus domestica	MDP0000765919	MDP0000196385	MDP0000062066	MDP0000272685	MDP0000194876
	MDP0000119414	MDP0000140449	MDP0000218589	MDP0000191983	MDP0000171861
	MDP0000153761	MDP0000121876	MDP0000154790	MDP0000190086	MDP0000243329
	MDP0000552093	MDP0000163344	MDP0000119413	MDP0000235035	MDP0000302379
Manihot esculenta	cassava4.1_033854m	cassava4.1_024895m	cassava4.1_030227m	cassava4.1_003201m	cassava4.1_003199m
	cassava4.1_003582m	cassava4.1_024363m
Medicago truncatula	Medtr3g079750.1	Medtr2g030000.1	Medtr7g086030.1	Medtr5g069800.1	Medtr7g086010.1
	Medtr5g069740.1	AC235673_11.1
Mimulus guttatus	mgv1a002814m	mgv1a003439m	mgv1a002476m	mgv1a002879m	mgv1a002782m
	mgv1a002845m	mgv1a019891m	mgv1a020896m	mgv1a003116m	mgv1a003210m
Oryza sativa	LOC_Os03g53800.5	LOC_Os03g53800.4	LOC_Os03g53800.3	LOC_Os03g53800.2	LOC_Os03g53800.1
	LOC_Os03g53860.5	LOC_Os03g53860.4	LOC_Os03g53860.3	LOC_Os03g53860.2	LOC_Os03g53860.1
	LOC_Os02g03870.1	LOC_Os01g56510.5	LOC_Os01g56510.4	LOC_Os01g56510.3	LOC_Os01g56510.2
	LOC_Os01g56510.1	LOC_Os03g53790.1	LOC_Os05g37700.1	LOC_Os05g37700.2
Panicum virgatum	Pavirv00044084m	Pavirv00044083m	Pavirv00044082m	Pavirv00057654m	Pavirv00000883m
	Pavirv00015776m	Pavirv00021236m	Pavirv00021235m	Pavirv00001262m	Pavirv00040732m
	Pavirv00029174m	Pavirv00022627m	Pavirv00015364m	Pavirv00023155m	Pavirv00060136m
	Pavirv00060135m	Pavirv00023191m	Pavirv00015460m	Pavirv00012515m	Pavirv00047960m
	Pavirv00013835m
Physcomitrella patens	Pp1s1821_1V6.1	Pp1s217_8V6.1	Pp1s309_65V6.2	Pp1s309_65V6.1	Pp1s49_195V6.1
Phaseolus vulgaris	Phvul.007G250300.1	Phvul.004G050500.1	Phvul.006G128800.1	Phvul.008G210100.1	Phvul.001G112700.1
	Phvul.006G065600.1	Phvul.001G112600.2	Phvul.001G112600.1
Picea abies	MA_10437038g0010	MA_56211g0010	MA_41345g0010	MA_10429527g0010	MA_10435456g0010
	MA_10247978g0010	MA_10435456g0020	MA_8496645g0010	MA_10435456g0030
Populus trichocarpa	Potri.019G037400.1	Potri.013G055600.2	Potri.013G055600.1	Potri.008G013500.1	Potri.019G037400.2
	Potri.008G013700.1	Potri.009G153900.3	Potri.009G153900.1	Potri.009G153900.2	Potri.009G042800.2
	Potri.009G042800.1	Potri.009G154000.1	Potri.009G154800.1	Potri.009G153900.4	Potri.005G059200.1
Prunus persica	ppa014605m	ppa020836m	ppa014607m	ppa002559m	ppa015239m
	ppa002894m	ppa003012m	ppa025914m	ppa014895m	ppa026252m
	ppa006354m	ppa018735m	ppa022452m	ppa021476m
Ricinus communis	43378.m000013	29976.m000489	30072.m000981	29852.m002020	29976.m000487
	29681.m001297	34040.m000025
Setaria italica	Si034693m	Si034691m	Si034690m	Si034605m	Si034551m
	Si034710m	Si034709m	Si034708m	Si034705m	Si034703m
	Si020199m	Si000575m	Si020102m	Si019228m	Si019105m
	Si004089m	Si040033m	Si024819m	Si021490m	Si035613m
Selaginella moellendorffii	157260	74114
Sorghum bicolor	Sb01g008040.3	Sb01g008040.2	Sb01g008040.1	Sb01g008030.5	Sb01g008030.4
	Sb01g008030.3	Sb01g008030.2	Sb01g008030.1	Sb03g035970.1	Sb04g002570.1
	Sb04g002560.1	Sb04g002580.1	Sb01g008050.1	Sb09g022050.2	Sb09g022050.1
Thellungiella halophila	Thhalv10012965m	Thhalv10012964m	Thhalv10012963m	Thhalv10012900m	Thhalv10015493m
	Thhalv10010277m	Thhalv10010212m	Thhalv10005832m	Thhalv10010213m	Thhalv10010219m
Vitis vinifera	GSVIVT01012185001	GSVIVT01037543001	GSVIVT01023452001	GSVIVT01023455001	GSVIVT01022483001
	GSVIVT01034613001	GSVIVT01037542001	GSVIVT01024793001	GSVIVT01037547001	GSVIVT01037546001
Zea mays	AC197578.4_FGT001

Orthologous Group

Species

Aquilegia coerulea