| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018172 |
| Family | GH3 |
| Protein Properties | Length: 610 Molecular Weight: 66441.3 Isoelectric Point: 4.6444 |
| Chromosome | Chromosome/Scaffold: 06 Start: 10793274 End: 10795891 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 88 | 323 | 0 |
| LASRLGIPIIYGTDAVHGNNNVYGATIFPHNIGLGATRDAELVKRIGAVTALEVRASGIHWTFAPCVAVLGDPRWGRCYESYGEAAKIVSEMSSIISGLQ GEPPEEHPNGYPFLAGRNNLIACAKHFVGDGGTDKGLSEGNTIASYEDLERIHVAPYVNCISQGVCTVMASFSSWNGSRLHSDYYLLTEVLKQKLGFKGF LVSDWDGLETISEPQGSDNRNCVKLGINAGIDMVMV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 610 Download |
| MAETTDSSCV YKNPDAPVEA RVQDLLSRMT LQEKIGQMTQ IERSVASHDV LTDYFIGSVQ 60 SGAGSWPFED AKSSDWADMI DGFQRSALAS RLGIPIIYGT DAVHGNNNVY GATIFPHNIG 120 LGATRDAELV KRIGAVTALE VRASGIHWTF APCVAVLGDP RWGRCYESYG EAAKIVSEMS 180 SIISGLQGEP PEEHPNGYPF LAGRNNLIAC AKHFVGDGGT DKGLSEGNTI ASYEDLERIH 240 VAPYVNCISQ GVCTVMASFS SWNGSRLHSD YYLLTEVLKQ KLGFKGFLVS DWDGLETISE 300 PQGSDNRNCV KLGINAGIDM VMVPYKYQQF IEDLTDLVES GEVQMARIND AVEKILRVKF 360 VAGLFEYPLT DRSLLPTVGC KEHREVAREA VRKSLVLLKN GKNDDKPFLP LDRTAERILV 420 VGTHADDLGN QCGGWTKTKS GQSGKITLGT TLLDAIKAAV GDKTEVIYEK TPSKETLASC 480 EDFSYAIVAL GEPPYAEMRG DNSELTIPLN GNNIVTAVAE KIPTLVILFT GRPMVLEMPV 540 LEKTEALVAA WFPGTEGQGM ADVIFGDYDF EGKLPLSWFK RVDQLPLNVD SNFYDPLFPL 600 GYGLNCNSG* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 6.0e-45 | 5 | 605 | 665 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-50 | 395 | 605 | 228 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-83 | 30 | 358 | 333 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| COG1472 | BglX | 5.0e-85 | 29 | 460 | 441 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| PRK15098 | PRK15098 | 2.0e-90 | 13 | 604 | 667 | + beta-D-glucoside glucohydrolase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY25449.1 | 0 | 29 | 609 | 1 | 581 | At3g47010 [Arabidopsis thaliana] |
| RefSeq | NP_190284.1 | 0 | 6 | 605 | 5 | 604 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190285.3 | 0 | 1 | 609 | 1 | 609 | hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_190288.1 | 0 | 3 | 608 | 2 | 632 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190289.1 | 0 | 5 | 608 | 4 | 605 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1j8v_A | 0 | 10 | 608 | 4 | 601 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1iex_A | 0 | 10 | 608 | 4 | 601 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1iew_A | 0 | 10 | 608 | 4 | 601 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1iev_A | 0 | 10 | 608 | 4 | 601 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1ieq_A | 0 | 10 | 608 | 4 | 601 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX132989 | 299 | 57 | 355 | 0 |
| EX134175 | 297 | 314 | 610 | 0 |
| DY265467 | 328 | 137 | 464 | 0 |
| HO784016 | 424 | 57 | 479 | 0 |
| HO784016 | 48 | 11 | 58 | 0.0000000006 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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