| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018177 |
| Family | GH3 |
| Protein Properties | Length: 609 Molecular Weight: 66056 Isoelectric Point: 4.9961 |
| Chromosome | Chromosome/Scaffold: 06 Start: 10832192 End: 10834842 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 87 | 322 | 0 |
| LASRLGIPIIYGTDAVHGNNNVYGATVFPHNIALGATRDADLVRRIGAATALEVRASGVHWAFAPCVAVLGDPRWGRSYECYGEDTGLVSEMTSLVSGLQ GEPPEEHPNGYPFVAGSNKVVACAKHFVGDGGTDKGVNEGNTIASYEDLEKIHIPPYLKCLAQGVSTVMASYSSWNGSNLHSSYFLLTEVLKEKLGFKGF VVSDWEGLDRLSDPWGSNYRNCVKTAVNAGIDMVMV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 609 Download |
| MVGREEPCVY QTPDAPVEAR VKDLLSRMTL PEKIGQMTQI ERTVASPAAI RDFFIGSVLN 60 SGGSAPFEDA KSSDWADMID GFQRSALASR LGIPIIYGTD AVHGNNNVYG ATVFPHNIAL 120 GATRDADLVR RIGAATALEV RASGVHWAFA PCVAVLGDPR WGRSYECYGE DTGLVSEMTS 180 LVSGLQGEPP EEHPNGYPFV AGSNKVVACA KHFVGDGGTD KGVNEGNTIA SYEDLEKIHI 240 PPYLKCLAQG VSTVMASYSS WNGSNLHSSY FLLTEVLKEK LGFKGFVVSD WEGLDRLSDP 300 WGSNYRNCVK TAVNAGIDMV MVPFKYEQFI QDMTDLVESG EIPMARVNDA VERILRVKFV 360 AGLFEHPFSD RSLLGTVGCK EHRELGREAV RKSLVLLKNG KHADKPFLPL DRNAKRILVT 420 GTHADDLGYQ CGGWTKTWFG LSGRITIGRT LLDAIKAAVG DNTEVVYEKT PSKETLASSE 480 GFSYAIVAVG ESPYAETKGD SSELIIPFNG SDIVTTVAER IPTLVMLISG RPVVLEPTVL 540 EKTEALVAAW LPGTEGQGMA DVIFEDYDFE GKLPVSWFKT VEHLPVNART NSYDPLFPLG 600 FGLSSKPV* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03080 | PLN03080 | 2.0e-41 | 16 | 604 | 659 | + Probable beta-xylosidase; Provisional | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-47 | 394 | 604 | 228 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| PRK15098 | PRK15098 | 4.0e-82 | 11 | 604 | 675 | + beta-D-glucoside glucohydrolase; Provisional | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-85 | 29 | 357 | 333 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| COG1472 | BglX | 2.0e-89 | 28 | 464 | 450 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY25449.1 | 0 | 28 | 606 | 1 | 579 | At3g47010 [Arabidopsis thaliana] |
| RefSeq | NP_190284.1 | 0 | 1 | 608 | 1 | 608 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190285.3 | 0 | 5 | 606 | 6 | 607 | hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_190288.1 | 0 | 1 | 604 | 1 | 629 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | NP_190289.1 | 0 | 1 | 608 | 1 | 606 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x39_A | 0 | 9 | 606 | 4 | 600 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 1x38_A | 0 | 9 | 606 | 4 | 600 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 1lq2_A | 0 | 9 | 606 | 4 | 600 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1j8v_A | 0 | 9 | 606 | 4 | 600 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1iex_A | 0 | 9 | 606 | 4 | 600 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES905148 | 278 | 1 | 278 | 0 |
| DK471066 | 274 | 1 | 274 | 0 |
| DY265467 | 356 | 136 | 489 | 0 |
| EX132989 | 299 | 56 | 354 | 0 |
| DK466380 | 249 | 1 | 249 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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