| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018423 |
| Family | CBM45 |
| Protein Properties | Length: 1396 Molecular Weight: 156512 Isoelectric Point: 5.8578 |
| Chromosome | Chromosome/Scaffold: 05 Start: 8138590 End: 8145745 |
| Description | Pyruvate phosphate dikinase, PEP/pyruvate binding domain |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM45 | 389 | 467 | 4.3e-21 |
| LHWALSQKGGEWLDPPSDILPPNSLPVRGAVDTQLTIASTDLPSPVQTFEVEIEGDSYKGMPFVLKAGERWIKNSGRDF | |||
| CBM45 | 116 | 191 | 2.7e-24 |
| LHWGAIRDNKEKWVLPSRSPDRTINYKSRALRTPFVKSGGNSYLKLEIDDHAIQAIEFLIFDESRNKWYKNNGQNF | |||
| Full Sequence |
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| Protein Sequence Length: 1396 Download |
| MSNSLVHNLL NRALIRPPHH TKLNSSSLQP VGKISRSNLS TQLYGKGLHK SGRRLLTESG 60 RPVSFVTRAV LAMDPASQAV EKFNLDGNID LLVEVTSTNV REVNIQIAHT SDSLLLHWGA 120 IRDNKEKWVL PSRSPDRTIN YKSRALRTPF VKSGGNSYLK LEIDDHAIQA IEFLIFDESR 180 NKWYKNNGQN FHINLPMGSN VEHNVSVPED LVQIQAYIRW ERNGKQNYSP EKEKEEYEAA 240 RTELREEMMR GASVEDLRRM LKKDDNSDSP ESKETSSSGQ ESEKKVSKQP KQKKHFSTEK 300 IQRKGRDLNK LICKHAADSV EPESKSSSEP RALTTLEMYA KAKEEQESTP VFSKKTFKLE 360 GSMILVLVTK LSGKTKIHLA TDYKEKITLH WALSQKGGEW LDPPSDILPP NSLPVRGAVD 420 TQLTIASTDL PSPVQTFEVE IEGDSYKGMP FVLKAGERWI KNSGRDFYVD FAKEEKHVQK 480 DYGDGKGTAK NLLDRIADLE SEAQKSFMHR FNIAADLVDE AKNAGQLGFA GILVWMRFMA 540 TRQLVWNKNY NVKPREISKA QDRLTDVLQE VYASYPEYRE LLRMIMSTVG RGGEGDVGQR 600 IRDEILVIQR NNDCAGGMME EWHQKLHNNT SPDDVVICQA LMDYVKSDFD MSVYWKTLND 660 NGITKERLLS YDRAIHSEPS FRREQKDGLL RDLGHYMRTL KAVHSGADLE SAIQNCMGYQ 720 DDGEGFMVGV QINPVSGLPS GYPDLLRFVL QHVEEKNVEP LLEGLLEARQ ELRPLLLKSH 780 DRLKDLLFLD LALDSTVRTA IERGYEQLND AGPEKIMYFI SLVLENLALS SDDNEDLIYC 840 LKGWQFALNM FKSKKDHWAL YAKSVLDRSR LALQSKAERY LEILQPSAEY LGSCLGVDQW 900 AVSIFTEEII RAGSAAALSS LVNRLDPVLR QTANLGSWQV ISPVEVVGYV IVVDELLTVQ 960 NKTYDRPTII VAKRVRGEEE IPDGAVAVLT PDMPDVLSHV SVRARNGKIC FATCFDSGIL 1020 SDLQAMDGKV LSLKPTSADV VYREVNESEV SSQSSDNLED VPPPSISLVK KQFVGRYAIS 1080 SEEFTNDLVG AKSRNIGYLK GKVPSWVGIP TSVALPFGVF EKVLSEKANQ AVSEKLQVLK 1140 KSLDEGDQGA LGEIRKTVLG LVAPAELVEE LKSTMKSSDM PWPGDEGEQR WEQAWSAIKK 1200 VWASKWNERA YFSTKKVKLD HDYLCMAVLV QEVINADYAF VIHTTNPSSG DSSEIYAEVV 1260 KGLGETLVGA YPGRSLSFIC KKNNLDTPLL LGYPSKPIGL FIRRSIIFRS DSNGEDLEGY 1320 AGAGLYDSVP MDEEDKVVLD YTTDPLITDE SFQQKILSDI ARAGDAIEKL YGTPQDIEGV 1380 IRDGKLYVVQ TRPQV* 1440 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02784 | PLN02784 | 7.0e-11 | 344 | 506 | 184 | + alpha-amylase | ||
| COG0574 | PpsA | 5.0e-12 | 1190 | 1393 | 207 | + Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism] | ||
| PRK06464 | PRK06464 | 7.0e-16 | 1197 | 1393 | 209 | + phosphoenolpyruvate synthase; Validated | ||
| TIGR01418 | PEP_synth | 4.0e-21 | 1087 | 1394 | 341 | + phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes [Energy metabolism, Glycolysis/gluconeogenesis]. | ||
| pfam01326 | PPDK_N | 9.0e-37 | 1087 | 1394 | 333 | + Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005524 | ATP binding |
| GO:0016301 | kinase activity |
| GO:0016310 | phosphorylation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD31337.1 | 0 | 1 | 1395 | 1 | 1358 | AC007354_10 Strong similarity to gb |
| GenBank | AAF17665.1 | 0 | 41 | 1395 | 160 | 1540 | AC009398_14 F20B24.19 [Arabidopsis thaliana] |
| RefSeq | NP_563877.1 | 0 | 1 | 1395 | 1 | 1399 | SEX1 (STARCH EXCESS 1); alpha-glucan, water dikinase [Arabidopsis thaliana] |
| RefSeq | XP_002315679.1 | 0 | 11 | 1395 | 16 | 1477 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527902.1 | 0 | 1 | 1395 | 1 | 1469 | alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2ols_A | 0.000002 | 1089 | 1394 | 20 | 336 | A Chain A, The Crystal Structure Of The Phosphoenolpyruvate Synthase From Neisseria Meningitidis |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation II | RXN-12203 | EC-2.7.9.4 | α-glucan, water dikinase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777523 | 898 | 500 | 1396 | 0 |
| HO794398 | 752 | 646 | 1396 | 0 |
| HO794398 | 142 | 505 | 646 | 0 |
| EX118207 | 304 | 980 | 1283 | 0 |
| HO644248 | 444 | 955 | 1396 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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