| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018587 |
| Family | GH2 |
| Protein Properties | Length: 938 Molecular Weight: 106457 Isoelectric Point: 5.3123 |
| Chromosome | Chromosome/Scaffold: 06 Start: 3098235 End: 3102403 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH2 | 39 | 740 | 0 |
| KSPWMEAAVPGTVLGTLLKNKSIPDPFYGLENETITDIADSGRDYYTFWFSTQFHCKRLLNQYVHLNFRAINYSAEVYVNGHEIVLPKGMFRRHTLDVTD ILRPDSDNLLAVIVHPPDHPGTIPPQGGQGGDHEIGKDVAAQYVEGWDWICPIRDRNTGIWDEVSISVTGPVRIIDPHLVSTFYDDYERAYLHVTAELEN KSTWNAECSVNIKETAELENGVCLVEHLHTENVLIPARGNIHHTFKPLYLYKPELWWPNGMGKQNLYDVLITVAVKEFGESDSWMQPFGFRKIESVIDSA TGGRLFKVNGEPIFIRGGNWILSDGLLRLSKERYRTDIKFHADMNVNMIRCWGGGLAERPEFYHFCDVYGLLVWQEFWITGDVDGRGDPVSNPNGPLDHD LFLLCARDTIKLLRNHPSLALWVGGNEQVPPEDINEALKQDLRLHPYFTTQLLPDQDSDPSVYLDGTRVYIQGSMWDGFADGKGNFTDGPYKIQNPEDFF KDTYYKYGFNPEVGSVGMPVADTIRATMPPEGWEIPLFKKVSDGFVEEVPNRMWDYHKYIPYSEPGKVHDQILMYGTPENLDDFCLKAQLVNYIQYRALF EGWSSQMWTKYTGVLIWKNQNPWTGLRGQFYDHLLDQTASFYGCRSAAEPVHVQLNLASNFVEVVNTTPKELSDVEIEASVWDLDGNCPYSEVFNKVYAP PK | |||
| Full Sequence |
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| Protein Sequence Length: 938 Download |
| MAQIGKTLLD SGWLAARSTE VNDDGEQLTT TNPPSLGPKS PWMEAAVPGT VLGTLLKNKS 60 IPDPFYGLEN ETITDIADSG RDYYTFWFST QFHCKRLLNQ YVHLNFRAIN YSAEVYVNGH 120 EIVLPKGMFR RHTLDVTDIL RPDSDNLLAV IVHPPDHPGT IPPQGGQGGD HEIGKDVAAQ 180 YVEGWDWICP IRDRNTGIWD EVSISVTGPV RIIDPHLVST FYDDYERAYL HVTAELENKS 240 TWNAECSVNI KETAELENGV CLVEHLHTEN VLIPARGNIH HTFKPLYLYK PELWWPNGMG 300 KQNLYDVLIT VAVKEFGESD SWMQPFGFRK IESVIDSATG GRLFKVNGEP IFIRGGNWIL 360 SDGLLRLSKE RYRTDIKFHA DMNVNMIRCW GGGLAERPEF YHFCDVYGLL VWQEFWITGD 420 VDGRGDPVSN PNGPLDHDLF LLCARDTIKL LRNHPSLALW VGGNEQVPPE DINEALKQDL 480 RLHPYFTTQL LPDQDSDPSV YLDGTRVYIQ GSMWDGFADG KGNFTDGPYK IQNPEDFFKD 540 TYYKYGFNPE VGSVGMPVAD TIRATMPPEG WEIPLFKKVS DGFVEEVPNR MWDYHKYIPY 600 SEPGKVHDQI LMYGTPENLD DFCLKAQLVN YIQYRALFEG WSSQMWTKYT GVLIWKNQNP 660 WTGLRGQFYD HLLDQTASFY GCRSAAEPVH VQLNLASNFV EVVNTTPKEL SDVEIEASVW 720 DLDGNCPYSE VFNKVYAPPK IAVKISEFKY PKSENAKPVY FLLLKLYHAS DKTVISRNFY 780 WLHLPGKDYT LLETYRKKQI PLKITCNAVN VGTEYELEIN VHNTSRADVA KNARDGGLLQ 840 KLFSRLGGTE DSNFKVVEME GTHPGVAFFL RFSVHNAESE KQDTRILPVH YSDNYFSLVP 900 GESMSFKISF AAPTGMKKPP RVVLRGWNCP DGFTVFG* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02837 | Glyco_hydro_2_N | 9.0e-8 | 85 | 161 | 78 | + Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. | ||
| PRK09525 | lacZ | 6.0e-9 | 194 | 465 | 302 | + beta-D-galactosidase; Reviewed | ||
| pfam00703 | Glyco_hydro_2 | 9.0e-11 | 210 | 329 | 120 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 6.0e-18 | 98 | 465 | 379 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 3.0e-38 | 46 | 465 | 429 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAE97370.1 | 0 | 1 | 937 | 1 | 946 | endo-beta-mannosidase [Brassica oleracea] |
| EMBL | CBI36793.1 | 0 | 1 | 936 | 1 | 951 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_563833.2 | 0 | 1 | 937 | 1 | 944 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | XP_002319539.1 | 0 | 1 | 936 | 1 | 973 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512381.1 | 0 | 1 | 936 | 1 | 973 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 12 | 929 | 56 | 891 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 12 | 929 | 56 | 891 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 12 | 929 | 56 | 891 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_A | 0 | 12 | 929 | 56 | 891 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x05_B | 0 | 12 | 929 | 56 | 891 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES793920 | 369 | 373 | 736 | 0 |
| GO871600 | 333 | 301 | 625 | 0 |
| EX109426 | 264 | 104 | 367 | 0 |
| ES832790 | 305 | 491 | 795 | 0 |
| GO847639 | 344 | 510 | 853 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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