| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018707 |
| Family | GH28 |
| Protein Properties | Length: 473 Molecular Weight: 50888.1 Isoelectric Point: 4.4835 |
| Chromosome | Chromosome/Scaffold: 06 Start: 2418487 End: 2421156 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 102 | 428 | 0 |
| AACAVESSVVLAPEGGVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEWPEKDSKSQWLVFYRLDGFTFAGKGTVEGNGQKWWDLPCKPHRGPDGSSSS EPCVSPTMIRFFMSNNIEVGGLRIQNSPQFHMKFDGCEGVSINDIQISSPKLSPNTDGIHLGNTRSVAIHNSVVSNGDDCISIGTGCSDIDIQGVTCGPS HGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKECRNETSAVRVFDVQYRNIKGTYDVRS APIHFACSDTVACTNITMSEVELLPEE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 473 Download |
| MRILSGILVV YFISTLLFGQ LIYVARGRFH YHKRRGLSDP PPPPPAVTAN PPQVPSDPYP 60 NPNPDPAPGD SDSGCIFDVT SFGAVGDGSC DDTAAFKDAW KAACAVESSV VLAPEGGVFK 120 ITSTIFSGPC KPGLVFQLDG VLMPPDGPEE WPEKDSKSQW LVFYRLDGFT FAGKGTVEGN 180 GQKWWDLPCK PHRGPDGSSS SEPCVSPTMI RFFMSNNIEV GGLRIQNSPQ FHMKFDGCEG 240 VSINDIQISS PKLSPNTDGI HLGNTRSVAI HNSVVSNGDD CISIGTGCSD IDIQGVTCGP 300 SHGISIGSLG VHNSQACVSN ITVRNTVIRD SDNGLRVKTW QGGTGSVSNL LFENIQMENV 360 LNCIIVDQYY CQSKECRNET SAVRVFDVQY RNIKGTYDVR SAPIHFACSD TVACTNITMS 420 EVELLPEEGE LVDDPFCWNA YGTQETLTIP PIDCLLDGSP VVEEGYNSNP GC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-63 | 76 | 419 | 347 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 6.0e-64 | 77 | 455 | 386 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-80 | 79 | 419 | 345 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-87 | 109 | 420 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-92 | 76 | 468 | 396 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79535.1 | 0 | 1 | 472 | 1 | 492 | AC023673_23 F21D18.18 [Arabidopsis thaliana] |
| GenBank | AAK95305.1 | 0 | 1 | 472 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
| RefSeq | NP_175244.1 | 0 | 1 | 472 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263668.1 | 0 | 68 | 460 | 73 | 466 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002519290.1 | 0 | 1 | 460 | 1 | 469 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-24 | 139 | 424 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-24 | 139 | 424 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-24 | 139 | 424 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-24 | 139 | 424 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-24 | 139 | 424 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
