| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra018765 |
| Family | CBM49 |
| Protein Properties | Length: 625 Molecular Weight: 69130.9 Isoelectric Point: 9.3784 |
| Chromosome | Chromosome/Scaffold: 06 Start: 2104722 End: 2107431 |
| Description | glycosyl hydrolase 9C1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM49 | 532 | 611 | 4.1e-32 |
| IEFLHSITANWMAGNTRYYRHKVIIKNNSQKQISDLKLKIEDLSGPIWGLIPTGQKNTYQLPQWQKRLRAGQTHDFVYVQ | |||
| GH9 | 30 | 491 | 0 |
| NYGSALDKTFLFFEAQRSGKLPATQRVKWRGHSGLKDGLAQGVSLEGGYYDAGDHVKFGLPMAFSVTMLSWAAVDNRKELSGLNQMQQTLWSIRWGTDYF IKAHPQPNVLWGQVGDGQSDHYCWERAEDMTTSRTAYKLDQYHPGSDLAGETAAAFAAASLAFKPYNSSYSAILLSHAKELFSFADKYRGLYTDSIPNAK AFYMSSGYSDELLWAAAWLHRATGDQYYLKYTIDNAGYMGGTGWGMKEFSWDNKYAGVQVLLSKVLLEGKGGPYTSTLKQYQMKADYFSCACLKKNGGYN IQTTPGGLMYVREWNNLQYSSVAAFLLAIYSDYLSAANAKLNCPDGSVQPRALLDFARSQADYILGKNRQGMSYLVGYGPKYPIRVHHRGASVPSIFVQH SSVSCVQGFDSWYRRAQADPNVIHGALVGGPDQNDNYSDDRTNYEQSEPTLSGTAPLVGLFA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 625 Download |
| MSKFGRSLLG VSLLLTVLLA AATTAAEYYN YGSALDKTFL FFEAQRSGKL PATQRVKWRG 60 HSGLKDGLAQ GVSLEGGYYD AGDHVKFGLP MAFSVTMLSW AAVDNRKELS GLNQMQQTLW 120 SIRWGTDYFI KAHPQPNVLW GQVGDGQSDH YCWERAEDMT TSRTAYKLDQ YHPGSDLAGE 180 TAAAFAAASL AFKPYNSSYS AILLSHAKEL FSFADKYRGL YTDSIPNAKA FYMSSGYSDE 240 LLWAAAWLHR ATGDQYYLKY TIDNAGYMGG TGWGMKEFSW DNKYAGVQVL LSKVLLEGKG 300 GPYTSTLKQY QMKADYFSCA CLKKNGGYNI QTTPGGLMYV REWNNLQYSS VAAFLLAIYS 360 DYLSAANAKL NCPDGSVQPR ALLDFARSQA DYILGKNRQG MSYLVGYGPK YPIRVHHRGA 420 SVPSIFVQHS SVSCVQGFDS WYRRAQADPN VIHGALVGGP DQNDNYSDDR TNYEQSEPTL 480 SGTAPLVGLF AKLSVGSYGG GYSKPYQTTK PPASSYKATP TTYTPKQSGA PIEFLHSITA 540 NWMAGNTRYY RHKVIIKNNS QKQISDLKLK IEDLSGPIWG LIPTGQKNTY QLPQWQKRLR 600 AGQTHDFVYV QGGPQAKVSV LSYY* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02340 | PLN02340 | 0 | 27 | 623 | 597 | + endoglucanase | ||
| PLN02171 | PLN02171 | 0 | 29 | 623 | 603 | + endoglucanase | ||
| PLN02420 | PLN02420 | 0 | 29 | 493 | 467 | + endoglucanase | ||
| PLN00119 | PLN00119 | 0 | 30 | 494 | 465 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 30 | 491 | 464 | + Glycosyl hydrolase family 9. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005576 | extracellular region |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030246 | carbohydrate binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG29742.1 | 0 | 1 | 623 | 1 | 622 | AC084414_10 endo-beta-1,4-glucanase, putative [Arabidopsis thaliana] |
| EMBL | CBI27137.1 | 0 | 18 | 624 | 17 | 615 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_175323.1 | 0 | 1 | 623 | 1 | 626 | AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002310080.1 | 0 | 26 | 623 | 23 | 610 | glycosyl hydrolase family 9 [Populus trichocarpa] |
| RefSeq | XP_002527135.1 | 0 | 6 | 624 | 2 | 620 | endo-1,4-beta-glucanase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 29 | 477 | 3 | 412 | A Chain A, Crystal Structure Of A Methyltransferase-Like Protein (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A Resolution |
| PDB | 1ksc_A | 0 | 29 | 477 | 3 | 412 | A Chain A, Crystal Structure Of A Methyltransferase-Like Protein (Spo2022) From Silicibacter Pomeroyi Dss-3 At 1.80 A Resolution |
| PDB | 1ks8_A | 0 | 29 | 477 | 3 | 412 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 2xfg_A | 0 | 29 | 493 | 24 | 459 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 4tf4_B | 0 | 29 | 512 | 4 | 458 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
