| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra019084 |
| Family | CBM43 |
| Protein Properties | Length: 494 Molecular Weight: 53785.1 Isoelectric Point: 8.9994 |
| Chromosome | Chromosome/Scaffold: 03 Start: 26408010 End: 26409759 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 34 | 126 | 2.5e-31 |
| IGVNYGRIANNLPSPENVVNLLKSQGINRIKIYDTDKNVLTALAHSRIKVVVCLPNELLSRTASDQSFTDKWVRHNVRKHFPATEVEAIAVGA | |||
| CBM43 | 405 | 488 | 8.6e-34 |
| WCVSNGDAAKEKLQAALDYACGEGGADCRPIQPGATCYHPKSLEAHASFAFNSYYQKNARRDGTCYFGGTAHVVTQHPRYGKCK | |||
| GH17 | 153 | 381 | 0 |
| GNEVFVDPKNTTPYLVRAMKNIHASLVKYNLDKSIKISSPIALSALANSYPPSSGSFKPDLVEPVIKPMLDLLRKTSSYLMVNAYPFFAYSGNADKISLD YALFRDNAGTVDSGNGLRYNSLFDAQLDAVYAAMSAVGFNDVKVMVTETGWPSAGDGNEIGASESNAAAYNGGLVKRVLNGNGTPLRPKEPLNVFLFALF NENQKPGPTSERNYGLFYPNERKVYAVPF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 494 Download |
| MLTENIMAVS FLPYCLILSF FSTISITQAS SGMIGVNYGR IANNLPSPEN VVNLLKSQGI 60 NRIKIYDTDK NVLTALAHSR IKVVVCLPNE LLSRTASDQS FTDKWVRHNV RKHFPATEVE 120 AIAVGAPSYV NFLKKFGGPK PVFQSAVPRT APGNEVFVDP KNTTPYLVRA MKNIHASLVK 180 YNLDKSIKIS SPIALSALAN SYPPSSGSFK PDLVEPVIKP MLDLLRKTSS YLMVNAYPFF 240 AYSGNADKIS LDYALFRDNA GTVDSGNGLR YNSLFDAQLD AVYAAMSAVG FNDVKVMVTE 300 TGWPSAGDGN EIGASESNAA AYNGGLVKRV LNGNGTPLRP KEPLNVFLFA LFNENQKPGP 360 TSERNYGLFY PNERKVYAVP FAATTSTPVN RNKEQAPVAH EGETWCVSNG DAAKEKLQAA 420 LDYACGEGGA DCRPIQPGAT CYHPKSLEAH ASFAFNSYYQ KNARRDGTCY FGGTAHVVTQ 480 HPRYGKCKFP TEY* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0003 | 225 | 372 | 151 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-24 | 404 | 476 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-38 | 404 | 489 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 9.0e-101 | 34 | 381 | 348 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL77689.1 | 0 | 24 | 491 | 17 | 458 | AT5g55180/MCO15_13 [Arabidopsis thaliana] |
| GenBank | AAM66024.1 | 0 | 24 | 491 | 17 | 458 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| EMBL | CAB36529.1 | 0 | 7 | 483 | 1 | 445 | putative beta-1, 3-glucanase [Arabidopsis thaliana] |
| RefSeq | NP_194413.2 | 0 | 7 | 491 | 1 | 453 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_568822.1 | 0 | 24 | 491 | 17 | 458 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 34 | 381 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 34 | 381 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 34 | 381 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 34 | 382 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 34 | 382 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
